Plant FIBer expression Database

Potri.012G065400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60840 62 / 2e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G065400.3 pacid=42783090 polypeptide=Potri.012G065400.3.p locus=Potri.012G065400 ID=Potri.012G065400.3.v4.1 annot-version=v4.1
ATGGCTTCACCGCAAGCAGCAGCAGCAGCACCTCCTTCTGTCTCCCAAACCGTTCCATCTCCGCCGCCGCTTCCCCCACCACCACCGCCACCGCCACCAG
TTGTCTCCAAGCTGGAGGAGAAGAAGCCAAGTGAGAAGGGTGTCCTTGTCCCCAATGCAAAACTGGATGAACAGCCTGACATTTCACATTTTGAGATTCT
TGACAGTGTGGAGTACATTGACAAATGCAAAAAATATGAAGCTGACTACACCCAGCGCTTGATGGCAAAATATTTCTCAAAGAAAGATCTTTATGGAGGC
AACATATTTGATGAGAAAATGACTATAGATAATGAGACAATAATGTCAAGCAAGTGGCCTTGTACTCTATCATTTGCAGACCCAGTAAAGAGTTTCGAGG
AACAGAGCAACACTGGTTCAACTTCAACATCAGAAGCCTGA
AA sequence
>Potri.012G065400.3 pacid=42783090 polypeptide=Potri.012G065400.3.p locus=Potri.012G065400 ID=Potri.012G065400.3.v4.1 annot-version=v4.1
MASPQAAAAAPPSVSQTVPSPPPLPPPPPPPPPVVSKLEEKKPSEKGVLVPNAKLDEQPDISHFEILDSVEYIDKCKKYEADYTQRLMAKYFSKKDLYGG
NIFDEKMTIDNETIMSSKWPCTLSFADPVKSFEEQSNTGSTSTSEA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G60840 unknown protein Potri.012G065400
[exp]
0 1
AT1G04985 unknown protein Potri.014G159600
[exp]
8.06 0.9185
AT3G54826 Zim17-type zinc finger protein... Potri.008G037300
[exp]
9.16 0.9119
AT2G36130 Cyclophilin-like peptidyl-prol... Potri.016G075600
[exp]
12.04 0.8827
AT5G63050 EMB2759 embryo defective 2759 (.1.2) Potri.015G079700
[exp]
12.64 0.9234
AT3G46630 Protein of unknown function (D... Potri.014G023400
[exp]
13.92 0.9284
AT5G40570 Surfeit locus protein 2 (SURF2... Potri.001G342400
[exp]
14.96 0.8732
AT2G41000 Chaperone DnaJ-domain superfam... Potri.006G024700
[exp]
19.36 0.9118
AT1G21770 Acyl-CoA N-acyltransferases (N... Potri.005G178501
[exp]
20.39 0.8981
AT4G04780 MED21 mediator 21 (.1) Potri.004G017100
[exp]
24.12 0.8882
AT1G09700 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BIN... Potri.005G153200
[exp]
24.49 0.8925

Potri.012G065400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.