Plant FIBer expression Database

Potri.012G065600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61150 445 / 3e-149 VIP4 VERNALIZATION INDEPENDENCE 4, leo1-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021161
[exp]
642 / 0 AT5G61150 533 / 0.0 VERNALIZATION INDEPENDENCE 4, leo1-like family protein (.1.2)
Lus10040529
[exp]
636 / 0 AT5G61150 528 / 0.0 VERNALIZATION INDEPENDENCE 4, leo1-like family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04004 Leo1 Leo1-like protein
Representative CDS sequence
>Potri.012G065600.1 pacid=42782638 polypeptide=Potri.012G065600.1.p locus=Potri.012G065600 ID=Potri.012G065600.1.v4.1 annot-version=v4.1
ATGGGGGAGGAGAAGAGGCATCAGATGATGCAGAACTTGTTCGGCGATCAGTCCGAAGAAGAAGAAGAGATCGATTCTGAGCACGAATCCAATCCCCAGC
CCAATTATGCTTCCGATGAAGCTGAGGGAGAGCTGAGGAATGACGGTGAAGGTGAAGGTGAAGGTGAAGTTGACGGGCAGGAGGATGTACATGTGGAAAG
TGAAGGTGAAATGCGTGAAGTAGAACCTGATCCTGGAGAAAGTGAGGGTGAAAGAGAACAAAGTTCCCAAGAGGTAGATATCGGTGATCAGAGGGATGAA
AGTGATGCAAAAGATTCTGACAGTGATGCTAAAGAAGAGTATGGTCACAGAGTGGCTACCAGCCGCAGACGTGATGTAATTGAAAGTGGTTCAGAGGAAC
ATCATTATGTTGATCATGAAGATGAGGAGGTCGATCAAGCTAGAAGTCCAAGCAAATCACCTGAGGAGGAGAAAGATCAGGCTCAAAATGCACAATCGGC
TCCTGCGATTCGTGATGTGTTTGGGGACTCTGAGGATGAAGAAGAGGATGCATATGCAGTTCGTAATGACATTGAGCAAGATTCTAATAGGTCTCCTATG
GAAGAGGAGGAAAGTTATGAAAAGAACCTGAGACCAGAGGATATGCTAGCTGACGAAGATGCTCAATATGAGTCAGAAGAGGAGAACCGAGAGGCTAAAC
CTAAAGAGAAGCCACTTGGCCCCCCATTGGAGATAGAGATGCCATTTTGCCCACCTCCAGCCGATCCTAAGAAGATGAACATGATTAAAGTATCCAATAT
TATGGGCATTGACCCCAACCAATTTGATCCTAAGACGTATGTGGAAGAGAAAACATTTGTGACAGATGAATCTGGAGCTCAAAAACGAATACGCCTAGAA
AACAATATTGTACGATGGAGGACTGTTAAGAATCCTGATGGCTCGAATTCGGTTGAAAGCAATGCACGCTTCGTGAGATGGTCTGATGGTAGTCTACAGT
TATTAATTGGGAATGAAGTTCTTGATATATCTGTGCAAGATGCGCAACAGGATCAAACACACCTTTTTCTTAGACATAACAAGTCACTTCTTCAATCACA
AGGAAGAATATTAAGGAAGATGAGGTTTATGCCATCATCATTGTCATCAAATTCCCATAGGCTATTGACTGCCCTTGTTGACTCTCGCCATAGAAAGGCT
TATAAAGTTAAGAACTGCATCACCGACATCGATCCTGAGAGAGAAAAGGAGGAAAAGGAAAAGGCTGAAAGTCAGACAATAAGAGCAAATGTACTTCTCA
ACCGAAAGAGGGAAAAGGTGAGCCGGAAATATACACCAAATGTAGAGAGGAGGCGCCAACTATCACCAGGATTTTTAGAGGGTGCTCTTGATGAGGACGA
TGAACCAGATTACTATAACTCTCGTCGTTCTCGCCGCTTTGAGGAAGATCTGGAAGTTGAAGCTCGAGCAGAGAAACGCATTATGAATGCTAAGAAGGGA
CAGAGAGACATTCCGCGGAAGTCTGATATGTCTGCTGTGAAATCATCAAAGCGCCCAGTGGATTTCTCTGATAGTGAAAGAGAGGAATCTGAGTATGAAA
CTGATGGAGATGAATATGAGAGGTCTCCAGTTCATAAGAGGGTTGATGAACCAGAGCATGAGTATGAAGAAGAGGAAGAACACTATGAGGAAGACACAGA
AGTTAATGGAGCCTCAGAGGAGGAAGAGGAGCCAAAGCAAAAGGGGAAGGAATTTGGCAGCAGTCGCAAGAGGATTGGGTTTGAGTCGGAAGAGGACTCT
CCTCCAAGAAAGATTCAATCGGGTCGTCGAATGACAGTGGTGTATGATAGTGACGAGGAATGA
AA sequence
>Potri.012G065600.1 pacid=42782638 polypeptide=Potri.012G065600.1.p locus=Potri.012G065600 ID=Potri.012G065600.1.v4.1 annot-version=v4.1
MGEEKRHQMMQNLFGDQSEEEEEIDSEHESNPQPNYASDEAEGELRNDGEGEGEGEVDGQEDVHVESEGEMREVEPDPGESEGEREQSSQEVDIGDQRDE
SDAKDSDSDAKEEYGHRVATSRRRDVIESGSEEHHYVDHEDEEVDQARSPSKSPEEEKDQAQNAQSAPAIRDVFGDSEDEEEDAYAVRNDIEQDSNRSPM
EEEESYEKNLRPEDMLADEDAQYESEEENREAKPKEKPLGPPLEIEMPFCPPPADPKKMNMIKVSNIMGIDPNQFDPKTYVEEKTFVTDESGAQKRIRLE
NNIVRWRTVKNPDGSNSVESNARFVRWSDGSLQLLIGNEVLDISVQDAQQDQTHLFLRHNKSLLQSQGRILRKMRFMPSSLSSNSHRLLTALVDSRHRKA
YKVKNCITDIDPEREKEEKEKAESQTIRANVLLNRKREKVSRKYTPNVERRRQLSPGFLEGALDEDDEPDYYNSRRSRRFEEDLEVEARAEKRIMNAKKG
QRDIPRKSDMSAVKSSKRPVDFSDSEREESEYETDGDEYERSPVHKRVDEPEHEYEEEEEHYEEDTEVNGASEEEEEPKQKGKEFGSSRKRIGFESEEDS
PPRKIQSGRRMTVVYDSDEE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61150 VIP4 VERNALIZATION INDEPENDENCE 4, ... Potri.012G065600
[exp]
0 1
AT5G25060 RNA recognition motif (RRM)-co... Potri.018G017200
[exp]
1.00 0.9087
AT2G46020 CHA2, ATBRM, CH... CHROMATIN REMODELING 2, ARABID... Potri.002G160900
[exp]
7.74 0.8771
AT3G14010 CID4 CTC-interacting domain 4 (.1.2... Potri.001G171100
[exp]
8.36 0.8545
AT3G54670 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE... Potri.005G224900
[exp]
8.83 0.8782 CPC902,TTN8.3
AT5G63550 DEK domain-containing chromati... Potri.012G102500
[exp]
9.94 0.8299
AT2G27170 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE... Potri.009G155200
[exp]
10.77 0.8766 TTN8.2
AT1G13190 RNA-binding (RRM/RBD/RNP motif... Potri.008G182500
[exp]
12.96 0.8107
AT1G24560 unknown protein Potri.008G183800
[exp]
13.56 0.7853
AT5G41770 crooked neck protein, putative... Potri.003G137200
[exp]
15.49 0.8046
AT3G60850 unknown protein Potri.014G070200
[exp]
15.49 0.8339

Potri.012G065600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.