Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74240 445 / 1e-157 Mitochondrial substrate carrier family protein (.1) AT4G39460 128 / 2e-34 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT1G34065 127 / 1e-33 SAMC2 S-adenosylmethionine carrier 2 (.1) AT2G30160 115 / 2e-29 Mitochondrial substrate carrier family protein (.1) AT4G11440 116 / 1e-28 Mitochondrial substrate carrier family protein (.1) AT2G26360 112 / 7e-28 Mitochondrial substrate carrier family protein (.1) AT5G46800 106 / 2e-26 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT1G07030 105 / 6e-26 Mitochondrial substrate carrier family protein (.1) AT2G35800 107 / 1e-25 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT5G66380 102 / 8e-25 ATFOLT1 folate transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085900 [exp] 125 / 3e-33 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 125 / 3e-33 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.003G127600 [exp] 126 / 4e-32 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 117 / 2e-30 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.005G189600 [exp] 115 / 5e-29 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 112 / 3e-28 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 107 / 1e-26 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 102 / 7e-25 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.010G217900 [exp] 105 / 1e-24 AT2G35800 1040 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017849 [exp] 463 / 2e-164 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10006812 [exp] 129 / 1e-34 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10005787 [exp] 124 / 1e-32 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10026395 [exp] 112 / 4e-28 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 109 / 3e-27 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 105 / 1e-25 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10040375 [exp] 106 / 6e-25 AT2G35800 1066 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10023493 [exp] 105 / 1e-24 AT2G35800 1056 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10034104 [exp] 98 / 4e-23 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10004565 [exp] 96 / 1e-22 AT5G46800 481 / 2e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.012G066000.1 pacid=42783712 polypeptide=Potri.012G066000.1.p locus=Potri.012G066000 ID=Potri.012G066000.1.v4.1 annot-version=v4.1 ATGGCGAGTAACAGCCCAACCTCGAGTGAAATGCAAGCTTCGGTAGCAGCGCACAATCATTTCTTTATATGGAGAGAGTTCTGTTGGGGAGCTATTGCTG GTGCTTTTGGGGAAGGAATGATGCATCCTGTGGACACCGTAAAGACACGAATCCAAAGTCAAGCTATTCTTAGTGGAGGAATTCAGACCCCCAAGAGCTT GCTTCAGATGGTTCGAGCAGTTGCAGTTACGGATGGAGCAAGAGGCTTTTATAGAGGTATAACTCCGGGGGTTACTGGATCTCTTGCTACTGGAGCAACA TATTTTGGTTTTATTGAGTCTGCTAAAAAGTGGATCGAGGAATCACATCCTAGCCTTGGGGGCCATTGGGCTCATTTCATTTTTGGAGCTGTTGGAGATA CACTTGGTTCGTTTGTATATGTTCCATGTGAAGTAATGAAACAACGCATGCAAGTACAAGGGTCAAGAACATCTTGGAATTCCAGCATTATTAAAGACAG CATCTCCAGGAAATCTGGTGAGCAAATTTATGGCTATTACACAGGGATGTTCCAGGCTGGAAGTTCAATATTGAAGGAGCAGGGGCCAAGAGGATTATAT GCTGGATACTGGTCTACGCTTGCAAGGGATGTGCCCTTTGCTGGCTTAATGGTTATGTTTTATGAAGCCTTGAAAGATTTGACAGAGTATGCGAAACAAA AATGGATTCCCAGTTTAGATCACCATATTAATAGTTCTGTGGAGGGACTTCTCCTGGGAGGATTGGCTGGAGGTTTTAGTGCCTATCTCACCACTCCCTT GGATGTGATCAAAACAAGATTGCAAGTACAGGGATCAATTATAAGGTACAATGGCTGGCTGGATGCTATTCGCAGGATTTGGATGATGGAAGGGGTCAAG GGATTGTTTAGAGGAAGCGTCCCCAGGATAACATGGTACATCCCAGCCTCTGCTCTTACCTTCATGGCTGTGGAATTCCTCAGGGACCAAATTCAATGA
AA sequence Show only first row Show all	>Potri.012G066000.1 pacid=42783712 polypeptide=Potri.012G066000.1.p locus=Potri.012G066000 ID=Potri.012G066000.1.v4.1 annot-version=v4.1 MASNSPTSSEMQASVAAHNHFFIWREFCWGAIAGAFGEGMMHPVDTVKTRIQSQAILSGGIQTPKSLLQMVRAVAVTDGARGFYRGITPGVTGSLATGAT YFGFIESAKKWIEESHPSLGGHWAHFIFGAVGDTLGSFVYVPCEVMKQRMQVQGSRTSWNSSIIKDSISRKSGEQIYGYYTGMFQAGSSILKEQGPRGLY AGYWSTLARDVPFAGLMVMFYEALKDLTEYAKQKWIPSLDHHINSSVEGLLLGGLAGGFSAYLTTPLDVIKTRLQVQGSIIRYNGWLDAIRRIWMMEGVK GLFRGSVPRITWYIPASALTFMAVEFLRDQIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74240			Mitochondrial substrate carrie...		Potri.012G066000 [exp]	0	1
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G013000 [exp]	1.00	0.8568
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Potri.006G250800 [exp]	1.41	0.8517
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Potri.003G010000 [exp]	1.73	0.8337
AT1G48920		ATNUC-L1, PARL1	PARALLEL 1, nucleolin like 1 (...		Potri.005G093100 [exp]	4.00	0.8190
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Potri.007G102800 [exp]	9.59	0.7421	CHR932
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.006G205100 [exp]	10.00	0.7395	Pt-E2F3.1,E2Fa_1
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.003G056700 [exp]	11.53	0.7474
AT1G06560			NOL1/NOP2/sun family protein (...		Potri.005G204900 [exp]	12.00	0.7413
AT3G09720			P-loop containing nucleoside t...		Potri.019G065300 [exp]	12.96	0.7641
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Potri.006G267500 [exp]	13.60	0.7938	Pt-EIF3.6

Compare expression of checked genes

Potri.012G066000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.