Plant FIBer expression Database

ATPC.1 (Potri.012G066100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ATPC.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33040 515 / 0 ATP3 gamma subunit of Mt ATP synthase (.1)
AT4G04640 112 / 3e-28 ATPC1 ATPase, F1 complex, gamma subunit protein (.1)
AT1G15700 108 / 8e-27 ATPC2 ATPase, F1 complex, gamma subunit protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G057700
[exp]
607 / 0 AT2G33040 513 / 0.0 gamma subunit of Mt ATP synthase (.1)
Potri.011G024700
[exp]
121 / 1e-31 AT4G04640 518 / 0.0 ATPase, F1 complex, gamma subunit protein (.1)
Potri.004G014850
[exp]
106 / 5e-26 AT4G04640 557 / 0.0 ATPase, F1 complex, gamma subunit protein (.1)
Potri.011G003800
[exp]
49 / 1e-06 AT4G04640 140 / 2e-39 ATPase, F1 complex, gamma subunit protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042366
[exp]
567 / 0 AT2G33040 508 / 0.0 gamma subunit of Mt ATP synthase (.1)
Lus10012200
[exp]
560 / 0 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2)
Lus10007534
[exp]
469 / 6e-169 AT2G33040 445 / 3e-159 gamma subunit of Mt ATP synthase (.1)
Lus10040068
[exp]
108 / 8e-27 AT4G04640 497 / 3e-177 ATPase, F1 complex, gamma subunit protein (.1)
Lus10002078
[exp]
107 / 4e-26 AT4G04640 595 / 0.0 ATPase, F1 complex, gamma subunit protein (.1)
Lus10021535
[exp]
103 / 7e-25 AT4G04640 496 / 6e-177 ATPase, F1 complex, gamma subunit protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00231 ATP-synt ATP synthase
Representative CDS sequence
>Potri.012G066100.1 pacid=42783932 polypeptide=Potri.012G066100.1.p locus=Potri.012G066100 ID=Potri.012G066100.1.v4.1 annot-version=v4.1
ATGGCGATGGCAGCTGCTTTTAGACGCGAAGGAAGGAGATTTGTCTCCCCTCAACCAATCACCGACGTTCGATCCTCCCTTATCCCCGAGGACCATGCCC
CTCTTGGAGTACGTTCCATTTCAACTCAAGTTGTTAGAAATCGGATGAAAAGTGTCAAGAATATTCAGAAAATCACGAAGGCAATGAAGATGGTTGCAGC
CTCAAAGCTGCGATTAATTCAAACTAGAGCCGAAAATTCTCGTGGCCTGTGGCAGCCATTTACTGCACTTCTTGGAGATTCTCCCAGTGTTGATGTAAAG
AAGAATGTGATTGTCACTGTATCTTCGGACAAAGGTCTATGTGGTGGAATTAACTCTACAGCAGTCAAGATCAGCAGGGCCTTTAACAAGTTGACCTTAG
GTCCTGAGAAAGAAACAAAATATGTCATATTGGGAGAAAAGGCAAAGGCTCAGTTGATACGTGATTCAAAAAAGAACATTGCAATATGCATGACAGAGTT
GCAGAGGAATCCTCTGAATTATACCCAGGTCTCTGTTCTTGCAGACGACGTCTTAAAGAATGTGGAATATGATGCTTTGAGAATTGTCTTCAACAAGTTC
CAGTCAGTGGTCTCATTTCTACCAACTATGGCAACTGTATTATCACCTGAGGTTGTGGAGAGAGAGGCTGAATCTGGTGGGAGGCTTGGTGATCTTGATT
CCTATGAGATTGAAGGTGGTGAAACAAAGGGTGAAATACTTCAGAATCTTGCCGAGTTCCAATTTTCTTGTGTTCTGTTCAATGCGGTAATGGAGAGCGC
TTGCAGTGAGCAAGGTGCTAGAATGTCTGCTATGGATAGCTCAAGCAGAAATGCTGGAGATATGCTTGATCGGCTGACACTGACTTATAACAGAACTCGT
CAAGCATCTATCACAACAGAGTTGACTGAGATTATATCTGGAGCAGCTGCGCTGGAGGGTTAA
AA sequence
>Potri.012G066100.1 pacid=42783932 polypeptide=Potri.012G066100.1.p locus=Potri.012G066100 ID=Potri.012G066100.1.v4.1 annot-version=v4.1
MAMAAAFRREGRRFVSPQPITDVRSSLIPEDHAPLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRLIQTRAENSRGLWQPFTALLGDSPSVDVK
KNVIVTVSSDKGLCGGINSTAVKISRAFNKLTLGPEKETKYVILGEKAKAQLIRDSKKNIAICMTELQRNPLNYTQVSVLADDVLKNVEYDALRIVFNKF
QSVVSFLPTMATVLSPEVVEREAESGGRLGDLDSYEIEGGETKGEILQNLAEFQFSCVLFNAVMESACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTR
QASITTELTEIISGAAALEG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G33040 ATP3 gamma subunit of Mt ATP syntha... Potri.012G066100
[exp]
0 1 ATPC.1
AT5G43330 c-NAD-MDH2 cytosolic-NAD-dependent malate... Potri.010G071000
[exp]
2.44 0.9562
AT3G44330 unknown protein Potri.004G198200
[exp]
2.82 0.9453
AT5G51960 unknown protein Potri.008G044200
[exp]
5.83 0.9279
AT4G16450 unknown protein Potri.006G016300
[exp]
6.92 0.9356
AT5G20080 FAD/NAD(P)-binding oxidoreduct... Potri.006G218600
[exp]
7.74 0.9295
AT3G53020 RPL24B, STV1 SHORT VALVE1, Ribosomal protei... Potri.015G141900
[exp]
7.74 0.9430
AT5G57330 Galactose mutarotase-like supe... Potri.001G037700
[exp]
8.77 0.9332
AT5G65020 ANNAT2 annexin 2 (.1.2) Potri.005G075900
[exp]
10.00 0.9258 ANN1.3
AT4G17720 RNA-binding (RRM/RBD/RNP motif... Potri.003G095400
[exp]
10.00 0.9214
AT5G60860 AtRABA1f RAB GTPase homolog A1F (.1) Potri.019G092500
[exp]
10.39 0.9338 RAB11.11

Potri.012G066100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.