Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PSP.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18640 417 / 3e-148 PSP 3-phosphoserine phosphatase (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040521 [exp] 477 / 9e-172 AT1G18640 410 / 3e-145 3-phosphoserine phosphatase (.2) Lus10021156 [exp] 468 / 8e-168 AT1G18640 399 / 7e-141 3-phosphoserine phosphatase (.2) Lus10034686 [exp] 460 / 2e-164 AT1G18640 407 / 2e-143 3-phosphoserine phosphatase (.2) Lus10017851 [exp] 452 / 4e-161 AT1G18640 405 / 7e-143 3-phosphoserine phosphatase (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.012G066200.1 pacid=42783680 polypeptide=Potri.012G066200.1.p locus=Potri.012G066200 ID=Potri.012G066200.1.v4.1 annot-version=v4.1 ATGGAAGGCTTGGTGCACTATCGAATCAACCCCATTCATGCTACTCGTAGACAATATCACTCTTGTCTTGTACCAGCATTTTCCCTTCTTTTGTCAAAGA ATTTCACCAAAACTCCAGTTTTGTTTATGAAAGGTCATCGATCATTCAATTCTGTTGTTGCTTCTGTTCAGCCTTTGGACGCCTCTGGTTTAGGCCACTT TGACAATACCCTGCCATCCAAAGTCATTCTTCAACTTTGGAGAAGTGCTGATGCTGTGTGCTTTGATGTGGATAGCACGGTGTGCCTGGATGAGGGCATT GATGAACTTGCAGAGTTTTGTGGAGCTGGAAAGGCTGTTGCAGATTGGACTGCAAGAGCAATGGGTGGTTCTGTTCCCTTTGAGGAGGCCTTGGCTGCTA GATTATCTCTGTTCAAACCTTCCTTACCACAAGTTCAAGAATTTCTTGAAACGAGGCCCCCAAAGATTTCCCCTGGCATAAATGAGTTAGTCAAGAAGCT GAAGGCTAAGAACACAAATGTTTATCTGATCTCCGGGGGCTTTCGTCAAATGATCAATCCTGTTGCATCAATCCTTGGTATTCCACCCGAAAACATATTT GCAAACCAGCTACTCTTTGGAAGTTCTGGGGAGTTTGTAGGGTTTGATGTGAATGAGCCTACTTCCAGGAGTGGAGGAAAAGCAACGGCAGTTCAGAAAA TAAGGAAGGTCCGTGGATACAAGGCTCTGGTTATGATTGGGGATGGTGCAACAGATCTTGAGGCTCGTAAACCAGGAGGCGCTGACTTGTTTATTTGCTA TGCGGGTGTTCAACTTCGAGAGGCTGTTGCTGTGAAAGCTGATTGGCTGGTTTTCAATTTTGCAGATCTGATCAATTCCTTGGAATAG
AA sequence Show only first row Show all	>Potri.012G066200.1 pacid=42783680 polypeptide=Potri.012G066200.1.p locus=Potri.012G066200 ID=Potri.012G066200.1.v4.1 annot-version=v4.1 MEGLVHYRINPIHATRRQYHSCLVPAFSLLLSKNFTKTPVLFMKGHRSFNSVVASVQPLDASGLGHFDNTLPSKVILQLWRSADAVCFDVDSTVCLDEGI DELAEFCGAGKAVADWTARAMGGSVPFEEALAARLSLFKPSLPQVQEFLETRPPKISPGINELVKKLKAKNTNVYLISGGFRQMINPVASILGIPPENIF ANQLLFGSSGEFVGFDVNEPTSRSGGKATAVQKIRKVRGYKALVMIGDGATDLEARKPGGADLFICYAGVQLREAVAVKADWLVFNFADLINSLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18640		PSP	3-phosphoserine phosphatase (....		Potri.012G066200 [exp]	0	1	PSP.1
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.010G127500 [exp]	1.41	0.8766	PDF1.3
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Potri.010G001900 [exp]	8.12	0.8520	NPSN12.1
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	12.16	0.8894
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.003G220300 [exp]	18.97	0.8112	TUA2
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.018G063500 [exp]	27.05	0.8679	PtrSuSY1,Pt-SUS1.2
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.004G153500 [exp]	34.56	0.8596
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Potri.003G109100 [exp]	37.34	0.8474
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.008G105300 [exp]	39.03	0.8573	ACLB.2
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.001G106100 [exp]	43.30	0.8419
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.006G136700 [exp]	44.42	0.8569	Pt-SUS1.1

Compare expression of checked genes

Potri.012G066200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.