Plant FIBer expression Database

Potri.012G066225 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G031450
[exp]
42 / 4e-06 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G066225.1 pacid=42783462 polypeptide=Potri.012G066225.1.p locus=Potri.012G066225 ID=Potri.012G066225.1.v4.1 annot-version=v4.1
ATGTCAATACTGAGTAGAACAAGTAAGGCCGTCCTGAGCAAACAAGCCGCTCCCTCAACCCTCGCTCCCTCAACCCTCACACTTTCACATATCTCATCTC
ATTCTCAAGTCTCTAACAAAATCAAATTAATCCGTCTTCATCTCCGTTCTCCTGACTTCAGCCACATCTCTCTCCCACACAGGCATGACACACACCACGC
CGACACACCTAACCTCCAGAGTCCAAATCTAGCAAACCAGTCACCTCCCTCTCTCACACCCGACCTTGAATCTTGTCACAACTCACACCAGGTTGTTGCA
CAGAAAGTGAAAGAAGCTGAGATCACTCATGGCCAGCAGGACTCGCTTCTTCTGAATTCGGTGGAAAGTTACATCTAG
AA sequence
>Potri.012G066225.1 pacid=42783462 polypeptide=Potri.012G066225.1.p locus=Potri.012G066225 ID=Potri.012G066225.1.v4.1 annot-version=v4.1
MSILSRTSKAVLSKQAAPSTLAPSTLTLSHISSHSQVSNKIKLIRLHLRSPDFSHISLPHRHDTHHADTPNLQSPNLANQSPPSLTPDLESCHNSHQVVA
QKVKEAEITHGQQDSLLLNSVESYI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G066225
[exp]
0 1
AT4G31830 unknown protein Potri.018G106300
[exp]
1.00 0.9336
AT1G58470 XF41, ATRBP1 RNA-binding protein 1 (.1) Potri.014G012700
[exp]
3.16 0.9255
AT3G09780 CCR1, ATCRR1 CRINKLY4 related 1 (.1) Potri.016G089200
[exp]
4.47 0.8757
AT5G51170 unknown protein Potri.015G111628
[exp]
5.00 0.9073
AT4G18840 Pentatricopeptide repeat (PPR-... Potri.001G108500
[exp]
5.38 0.8641
AT1G80410 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753,... Potri.001G177700
[exp]
5.74 0.8890
AT5G09380 RNA polymerase III RPC4 (.1) Potri.005G126700
[exp]
6.00 0.8887
AT2G41050 PQ-loop repeat family protein ... Potri.016G023400
[exp]
7.74 0.8452
AT4G03180 unknown protein Potri.014G134700
[exp]
7.81 0.8451
AT1G65450 HXXXD-type acyl-transferase fa... Potri.002G244600
[exp]
8.18 0.8412

Potri.012G066225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.