Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07980 277 / 1e-75 dentin sialophosphoprotein-related (.1) AT5G07940 256 / 5e-69 unknown protein AT5G07970 224 / 1e-59 dentin sialophosphoprotein-related (.1) AT3G29385 110 / 8e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G056200 [exp] 2009 / 0 AT5G07980 252 / 8e-68 dentin sialophosphoprotein-related (.1) Potri.015G056400 [exp] 1052 / 0 AT5G07980 355 / 5e-100 dentin sialophosphoprotein-related (.1) Potri.012G061400 [exp] 979 / 0 AT5G07980 362 / 3e-102 dentin sialophosphoprotein-related (.1) Potri.009G025001 [exp] 47 / 1e-05 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040532 [exp] 546 / 1e-170 AT5G07980 290 / 5e-80 dentin sialophosphoprotein-related (.1) Lus10021162 [exp] 541 / 2e-165 AT5G07940 270 / 4e-73 unknown protein Lus10021621 [exp] 317 / 1e-88 AT5G07940 265 / 4e-72 unknown protein Lus10034693 [exp] 236 / 2e-63 AT5G07940 126 / 3e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G066600.6 pacid=42783319 polypeptide=Potri.012G066600.6.p locus=Potri.012G066600 ID=Potri.012G066600.6.v4.1 annot-version=v4.1 ATGTTCACTCTTTCTTTTTCCCTGCTTAAAAAAATAAAAATAAAAAATCGCTCTCTTTTACTTAGCTCTCAGCTCTGGACACCAAACACAACATACATCT CTATCTCCCATTCGATTCAAAACCCTAAATTAAAAATAAAGAAATCTCAAGCGAATAGAGGATCGTTTCGTTTGGAGCTCAAATTGAGGCGTCAAATTGA AAACAAGATTTCGGTCAGAATGGATTTTAACGAGTCTCCAGTTAATTATGATTTTTTCGGAGGTCAGCAGCAGCAAATTAGCGACCAGCATCCTGGCATG CTGCAATCTTTGCCAAGACAGCAGTCTGGGATTAGTGACATGCAGCTATTACAGCAACAGCTCATGCTTAAGCAAATGCAAGAAATGCAGAGGCAGCAAC AACTTCAGAAGCAACAAGAAGCTAGGAAGATGAATTCAATCAATCAGGTTTCTGCTTTTGCAAAACAGGCAGCTGCCAATCCCTCACAGGCTTTGATCAA TGGCATTCCTATTCGTGAAACATCTAATTACTCATGGCAGCCTGAGCTTATGGCAGCTAACACAACCTGGCAGCAGCGAGGTTTATCTCCAGTTATGCAA GGATCCTTCAGAGGGCATGTATTTTCTCCTGAGCAGGGCCAGGGAATGCCACGCTTGATGGGTACGGTTCCACAGCAGGTCGATCAATCTCTTTATGGTG TCCCTATCTCTGCAACAAGAGTCACTCAGAGTCAGTATTCTCCTGTCCCAATGGATAAGCCCTCGATGCAGCAGATATTAGGCAGCAGTAATTCCTTAAC AAGCAATCAGTATACTGGATTTCCAGAGCAGGTTAGCATGCAGGATGGAACTTTGGTTTCCAGACAGGGATATCAGGGGAAAAATATGATTGCTTCTTCT GATGGCCAGGGTATAAATACTGGATTTAATTTGGAAAGCCTGCAGCAACTGAATCCCCTGAAAAGCAATGGGCCTGTGCAAGAAATTTGCACGAGGCAAT ACTTGGCTGGTCCATCAGAAGCATCACAAGAGGAAACAGCGTTACAGGTTGCTCCTTCCCAGAATGTAGCTACCCTAGATCCAACTGAGGCACAGATTTT GTTTGGTCCAGATGATAATTTGTGGGATACCTTTGGCAGGGGTGCCAACATGGGTTCTGGAGGTTACAATATGTCGGATGGCACAGACTTTTTCAGTTCG TTGCCTTCTGTGCAAAGTGGGAGTTGGAGTGCTCTAATGCAATCTGCTGTAGCAGAAACTTCTAGTGGCGATACAGGCCTACAAGAAGAGTGGAGTTGTC TGAATTTTAGAAACAGTGAACCTCCAGCTGAGAATCAGCAGACTCCCTCTGTGATTGCTAGTAGCAAACAACAGTCAAATTGGGCTGATAATAGCTTGCA GTCAGCATCTTCCTTGAAGTCTCGACCCTCCCGTCTGTCTCATGAAATCAATACAGGTACGAGCTATAATAATATCCCAGGGGCTCAGCAATCTGGAGTC AATACTTCACATGAACACAGGGAGAGGTTGCAGTCTCTTTCTCCTCGTAGACATATTCAGCAGTTTCCAGAAGACGGAAGCAAGTGGTCAGATAGGAACC TGATGCAAAAAGCAGCTTTTGAAGGCAGTCATTTTCATGGAAAAGCTACCCATTCTTCTGATGCAGGGTCAAATACAAAGGGTGTTCCAGGTTCTTGGAC AAATCAACGGAGCATGCCATCATATAGCTCCAATGACCAACCACTAAATAGTCCAAGTGGCTGGAACTTTATGGATTCTATACCTCCCAGCACAACTGCT GCTTTAAAAAATCAGGAAAATGAAAACTCTTTCCAAGATTCTCATAATGTTGATAAAGAAGTTCCCATTTTTGAGGTAATGGGTCACGGTGCTGGTACAT GGAAGACTAATTCGATTTCTGAATTGGAGCATTCAAAATCTGCGATAGGGAACCCACAGGCCATTCCTCTAGCTTCTCCATCCCAACAGTTGCTCATTCC AGAGCGTGCCTTTCCTTCTCAGAGCCCCTCACAAGTGATTGGTTCTCTCAGTACAAATCAAGTCATTTCAAATACTGGGGAGAAGGGTCATACATTATTG GCACGTGCATCCTCTGTTCTGTCTTTACCTTTTTCATGCGATACATCTCATGGACATTTGAGGAATACTATTTCTGGCACCTCAGTGCATGCTGGCAGTA GTGCCCTAGGAAAGTTTTCTGCTGCCTTTTCCCCTGGTTTCCCTTATTCAAAAAATCATCTTCCAAATCAGGACATGCCTGATACAGGTGGACAAACAAC TGCCTGTGAATCTGTTAATGAATCTTTTGATAGGTTTTCTTCTCAACCAAAACAGACGGATGAATCTTTTGAGAGAGGTCAAACTAATCAATCAGCACAA CCTGACACATCCAGGCATACTACACATAATGATTTTTCCTCTTCTGCTGAGATGCCCCAGCCAAATGATGACAACCAAAACCATGCAAGAAATTCTGCTC AACAATTCCCTGTGCTGGAAACTGCACCGGCTCCTCAGCATTGTTCTTCATCACATGATGGTGTTTCTTCAAAAATCCAACCTCCTGTGTGGACAAGTGT TCCAAAACAGCTACGACCATTTGGTGCTCAGCCATTTCAGACTCCATCTGATATGTTTAAACCGAATCTTCAATCACACAAGTGTTCAGGCATAACTTTC TCTCAGCCACAGAAACTAGAAGATCAAACCATGCAAACTGGAGGGAACAGTCAAGCTGAATCTGATGAATGTTCTATGAATTCACATGGTTATGTTGGGA AAGAGCAACCAGCAAAAGAAGACCACTTGCAGCAAGTTCCACCTGAGAATAATTGGGCCCAGAAGACAAAGTGTGCTTCACATGAGAAAGAATCTGCTGT GAATCATCTTACTGAGCCTGCTTCAAATCTATCCAGTACACAGAAACAAATTGAAGCTTTTGGCCGATTTTTGAAACCCAATAATATTTTGCATCAGAGT TACTCCCTGCTGCATCAAAGGCAGGGAATGAGAAATGAAGAAGCCGATCATGCTAATAGGAGTTTGAAGAGATTTAAAAGTCCTGGTGGTTCTGTGAATG CTCATCTGGTAGCTACTCAGGGAAGTCAGCAGATTTATGAACACAATAATATGGCCAGAGATGCATCAGCAAATCATACTTCGTTTCCCCCTGGAGATTC CAAAATGCTAAGCCTTTCAGAAAAAACAGCTGATAATCAGGACATAAACGCTCCTTCAAAGGATATGCTTGCATTTGGTCGGAATGATTTTCAGAATTTT GCCAATAGCAATTCTGCAGTTTCTGTCAGAGATGAGCATTCTCAGATGAGTAATCAGATGGGTCCATCCTGGTTTGATAATTATGGAATCTTTAAAAATG AACAGATATTACCAATGCAGGATGCATGCAAAGATGTCACCATGAAGGCCTCAGAACTGCCTTTCATCGCTGGAAGACCTGATTCATCGCATGCTCATAG TTCTCTTGAGCAAGGAATTGTTGCTGCTGCTAATCAGTTTGGTATTTTCCAAAAAAGTTCTATCAGTTCATCAATAGCTTATGAGAATTTCTCTCAGTCA TTGCAGCCTGATTCTGCTGACGTGAATGTGGTGGTTATGAGATCAAAGAAGCGTAAAAGTACCATATCCAAGCTTGTACCTTGGCATAAGGAAGTGACAT TGGGTTCTCAAAGGTTTCAGAATCTCAGCGCAGCAGAAGTGGAGTGGGCACTGGCAGTGAATAGATTGACTGAGAAGGTGGAAGACGAACTTGAAATGGT AGATGATGGACTGCCAGTCCATAGATCAAAGAGAAGGCTTCTATTGACTACACAACTTATGCAGATACTCCTCCACCCTCCTCTGGCATTGATTCTTTCT GCAGATGCTATTTTACATTACGAGACTGCTGCGTACTTTGTTGCCAGGTCAACACTAGGAGATGCATGCAGCACATTCTCTTGTACTGGAAGCGATACTC CTGTGCCTTCTAACAGCGGAGACCTCCTGCCTGAGAAGATAAAATCATCAGAGAAGATTAGTGATCAATACTTCTCAAAAGTCATGGAAGACCTTATCAG CAGAACGAGGAAGCTGGAGAATGATTTGTTGAGATTGGAGAAAAGAGCATCAGTTTCGAACCTGAGAGTGGAATGCCAAGATCTAGAGAGGTTTTCTGTT ATCAATCGCTTTGCAAAGTTCCATGGCCGTGATCGAACTGATGGGACTGAGAGCTCATCGACCTCAGATGCAGCTGCAAATGCCCACAAATCCTGTCTTC AGAGATATGTTACTGCACTACCCATGCCTAGGAATCTTCCTGACAGGGTACAATGTCTTTCACTTTGA
AA sequence Show only first row Show all	>Potri.012G066600.6 pacid=42783319 polypeptide=Potri.012G066600.6.p locus=Potri.012G066600 ID=Potri.012G066600.6.v4.1 annot-version=v4.1 MFTLSFSLLKKIKIKNRSLLLSSQLWTPNTTYISISHSIQNPKLKIKKSQANRGSFRLELKLRRQIENKISVRMDFNESPVNYDFFGGQQQQISDQHPGM LQSLPRQQSGISDMQLLQQQLMLKQMQEMQRQQQLQKQQEARKMNSINQVSAFAKQAAANPSQALINGIPIRETSNYSWQPELMAANTTWQQRGLSPVMQ GSFRGHVFSPEQGQGMPRLMGTVPQQVDQSLYGVPISATRVTQSQYSPVPMDKPSMQQILGSSNSLTSNQYTGFPEQVSMQDGTLVSRQGYQGKNMIASS DGQGINTGFNLESLQQLNPLKSNGPVQEICTRQYLAGPSEASQEETALQVAPSQNVATLDPTEAQILFGPDDNLWDTFGRGANMGSGGYNMSDGTDFFSS LPSVQSGSWSALMQSAVAETSSGDTGLQEEWSCLNFRNSEPPAENQQTPSVIASSKQQSNWADNSLQSASSLKSRPSRLSHEINTGTSYNNIPGAQQSGV NTSHEHRERLQSLSPRRHIQQFPEDGSKWSDRNLMQKAAFEGSHFHGKATHSSDAGSNTKGVPGSWTNQRSMPSYSSNDQPLNSPSGWNFMDSIPPSTTA ALKNQENENSFQDSHNVDKEVPIFEVMGHGAGTWKTNSISELEHSKSAIGNPQAIPLASPSQQLLIPERAFPSQSPSQVIGSLSTNQVISNTGEKGHTLL ARASSVLSLPFSCDTSHGHLRNTISGTSVHAGSSALGKFSAAFSPGFPYSKNHLPNQDMPDTGGQTTACESVNESFDRFSSQPKQTDESFERGQTNQSAQ PDTSRHTTHNDFSSSAEMPQPNDDNQNHARNSAQQFPVLETAPAPQHCSSSHDGVSSKIQPPVWTSVPKQLRPFGAQPFQTPSDMFKPNLQSHKCSGITF SQPQKLEDQTMQTGGNSQAESDECSMNSHGYVGKEQPAKEDHLQQVPPENNWAQKTKCASHEKESAVNHLTEPASNLSSTQKQIEAFGRFLKPNNILHQS YSLLHQRQGMRNEEADHANRSLKRFKSPGGSVNAHLVATQGSQQIYEHNNMARDASANHTSFPPGDSKMLSLSEKTADNQDINAPSKDMLAFGRNDFQNF ANSNSAVSVRDEHSQMSNQMGPSWFDNYGIFKNEQILPMQDACKDVTMKASELPFIAGRPDSSHAHSSLEQGIVAAANQFGIFQKSSISSSIAYENFSQS LQPDSADVNVVVMRSKKRKSTISKLVPWHKEVTLGSQRFQNLSAAEVEWALAVNRLTEKVEDELEMVDDGLPVHRSKRRLLLTTQLMQILLHPPLALILS ADAILHYETAAYFVARSTLGDACSTFSCTGSDTPVPSNSGDLLPEKIKSSEKISDQYFSKVMEDLISRTRKLENDLLRLEKRASVSNLRVECQDLERFSV INRFAKFHGRDRTDGTESSSTSDAAANAHKSCLQRYVTALPMPRNLPDRVQCLSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07980			dentin sialophosphoprotein-rel...		Potri.012G066600 [exp]	0	1
AT3G62900			CW-type Zinc Finger (.1)		Potri.002G209409 [exp]	2.23	0.8834
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056200 [exp]	7.21	0.8424
AT1G77800			PHD finger family protein (.1....		Potri.005G171800 [exp]	7.41	0.8414
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	7.54	0.8480
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	8.48	0.8606	Pt-CRP.3
AT4G17610			tRNA/rRNA methyltransferase (S...		Potri.001G150900 [exp]	9.00	0.8349
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Potri.006G116000 [exp]	10.48	0.8342
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.019G075900 [exp]	11.31	0.8241
					Potri.013G071800 [exp]	12.12	0.8376
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.001G276500 [exp]	13.56	0.8352

Compare expression of checked genes

Potri.012G066600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.