Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61210 360 / 3e-125 SNP33, ATSNAP33B, SNAP33 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) AT1G13890 283 / 2e-95 ATSNAP30, SNAP30 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) AT5G07880 255 / 7e-85 ATSNAP29, SNAP29 ARABIDOPSIS THALIANA SYNAPTOSOMAL-ASSOCIATED PROTEIN SNAP25-LIKE 29, synaptosomal-associated protein SNAP25-like 29 (.1) AT3G09740 46 / 2e-05 ATSYP71, SYP71 syntaxin of plants 71 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049000 [exp] 479 / 4e-172 AT5G61210 403 / 3e-142 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.008G093800 [exp] 291 / 2e-98 AT1G13890 337 / 4e-117 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Potri.010G160350 [exp] 242 / 2e-79 AT1G13890 266 / 2e-89 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Potri.006G129500 [exp] 48 / 3e-06 AT3G09740 377 / 3e-133 syntaxin of plants 71 (.1) Potri.016G088200 [exp] 47 / 6e-06 AT3G09740 384 / 3e-136 syntaxin of plants 71 (.1) Potri.014G087400 [exp] 44 / 5e-05 AT3G09740 352 / 2e-123 syntaxin of plants 71 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015738 [exp] 374 / 1e-130 AT5G61210 381 / 1e-133 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10003466 [exp] 373 / 4e-130 AT5G61210 379 / 1e-132 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10034705 [exp] 370 / 4e-129 AT5G61210 350 / 1e-121 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10004660 [exp] 280 / 5e-94 AT1G13890 349 / 4e-122 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10036893 [exp] 278 / 3e-93 AT1G13890 335 / 2e-116 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10037092 [exp] 276 / 7e-93 AT1G13890 327 / 1e-113 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10026653 [exp] 177 / 6e-55 AT1G13890 220 / 1e-72 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10036118 [exp] 42 / 0.0003 AT3G45280 363 / 3e-127 syntaxin of plants 72 (.1) Lus10015075 [exp] 41 / 0.0007 AT3G09740 417 / 3e-149 syntaxin of plants 71 (.1) Lus10023178 [exp] 41 / 0.0009 AT3G09740 416 / 1e-148 syntaxin of plants 71 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G066700.1 pacid=42783737 polypeptide=Potri.012G066700.1.p locus=Potri.012G066700 ID=Potri.012G066700.1.v4.1 annot-version=v4.1 ATGTTTGGTTCAAAGAAATCTCCCTTGAAGATTTCTGAGCATAACAAGGCTGACCCTGAATGTCCTGCTCCTTCTCGGTCAAACCATTTTGAATCTGAGA ATGCGGTGGGCACCAAGAAATCCCTTAAACCACCAAGGAAAACTTCTTCTGAACCCAATCTAACTTCACCCAATTTCCGCACCAATCCTTTCGACAATGA TGAAGAAAGAGGGTTGTCTTCTTCATCTACATATTCCCTTGCTTTATCCACAAGACATAAGTACAAAAATGATTTCCTTGACTTGGGAGGACTAGAGAAT CAACCAGTTCAAGAATTGGAGAATTATGCTGTTTACAAGGCTGAGGAGACTACAAAAGCAGTAAATGGCTGCTTGAAGATTGCTGAAGAAATGAGAGAGG GTGCAACGACAACTTTGATCACCTTGCATCAACAGGGTGAGCAAATCACCAAGACCCACAGTGTTGCGGTTGAGATAGATCATGATCTTAGTCGGGGTGA GAAGCTTTTGGGAAGTCTTGGGGGCATGTTCTCTAAAACTTGGAAGCCGAAGAAGAATCGTGCAATTAGAGGCCCTGTTATCACAAGAGATGCTTCACCT CGAAGGAGGGGTAACCACTTGGAGCAGAGGGAGAAATTGGGTTTGAATCTTGCACCCAAGGAACGGTCAAGCACGAAAACACCCCTTCCGGAGACAGCCA ACGCATTTCAGAAAGTTGAGTTTGAGAAGTCAAAGCAAGATGATGCACTGTCTGATTTGAGTAATGTTATAGGAGAGTTGAAGAATATGGCTGTTGACAT GGGGGCTGAATTTGACAGGCAAGTCGGCGCTCTGGATCACGTCCAGGATGATGTGGATGAGCTAAATTCCCGTCTTGGGGGAGCAAATAAACGTGGCCTT CATTTACTTCGAAAGTAG
AA sequence Show only first row Show all	>Potri.012G066700.1 pacid=42783737 polypeptide=Potri.012G066700.1.p locus=Potri.012G066700 ID=Potri.012G066700.1.v4.1 annot-version=v4.1 MFGSKKSPLKISEHNKADPECPAPSRSNHFESENAVGTKKSLKPPRKTSSEPNLTSPNFRTNPFDNDEERGLSSSSTYSLALSTRHKYKNDFLDLGGLEN QPVQELENYAVYKAEETTKAVNGCLKIAEEMREGATTTLITLHQQGEQITKTHSVAVEIDHDLSRGEKLLGSLGGMFSKTWKPKKNRAIRGPVITRDASP RRRGNHLEQREKLGLNLAPKERSSTKTPLPETANAFQKVEFEKSKQDDALSDLSNVIGELKNMAVDMGAEFDRQVGALDHVQDDVDELNSRLGGANKRGL HLLRK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Potri.012G066700 [exp]	0	1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091300 [exp]	1.00	0.9301
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131300 [exp]	2.82	0.9073
AT1G34750			Protein phosphatase 2C family ...		Potri.005G164600 [exp]	5.47	0.8987
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Potri.010G077700 [exp]	6.92	0.8537	Pt-MPI7.1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	9.16	0.8935
AT4G14090			UDP-Glycosyltransferase superf...		Potri.017G101800 [exp]	11.40	0.8867
AT5G48655			RING/U-box superfamily protein...		Potri.014G191400 [exp]	12.96	0.8198
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.006G033201 [exp]	13.49	0.8551
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Potri.015G049000 [exp]	15.49	0.8790
AT1G21380			Target of Myb protein 1 (.1)		Potri.005G184900 [exp]	17.14	0.8506

Compare expression of checked genes

Potri.012G066700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.