Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034709 [exp] 1499 / 0 ND / Lus10021651 [exp] 1493 / 0 ND / Lus10034708 [exp] 79 / 4e-14 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G066900.1 pacid=42783650 polypeptide=Potri.012G066900.1.p locus=Potri.012G066900 ID=Potri.012G066900.1.v4.1 annot-version=v4.1 ATGGAGAACACTGGAGAAGCAGTGGATGATCAGGGATCAGGATGGTTTCAAGTGAAAAAGAAGCATAGAAGCAGCTCAAAGTTTTCATTGCATAGCTCGG CTGCAGGATTTTCTGAAAAGAATGGTTCCAGTTGTCATATTACCCAACCATCATCGAGTGAAAAAAACAGGAATTTGTGTGGGAAGCATGTATCCCATCA TTCAAAGGGAGGGCCAAATCATTCCATAAATGGTTGTGGCAACTCTGCGAACTCTTCTTCCGTGTCAAACCAAGATGAAAACAGGGTGTTCCTGCCCCAT AAATTATTGGTTACACAACATGGGGAAGATAGTGGATGTTCCAAGTTGTCGCCAGTGTTGATTACCAATTCTAATGCCAAAGTTGGTGACACCCAGAAAA TGTTATTGAAGGACAAGCCTGATGTTCCAAAGATCAAGTGGGGAGATCTAGAGGATGATTTATTGATTCTGCATGGTGAAAATAATTCTCAAGTGGTTAA AAAGTTTGTTGGTGAAGGAAATAATAATTTGGTGGATAGGATGCCAGAGAATAACTGTCATTTTGTTTCACATGTTTCTTCTTCTAGCAACCTTCAAGAA AACAGATTGGTGGCCTCATCAGTAAATGTAGATATTTCTCCTGATCAAACGTTTCCATTCACTAATAAAGAAGATTTACATGGAAAAAACAGTAAAGATG TTAGTGAAACTTCATCTCAAGACGTAGAGGTACCAAGTACAGATGGCAGAATGGTTGTTCCAAATTATCCACAAAATTGCAAGGAAAAAATCACTGAAAA TTCTAAAACAACAGATGATGATTTTTCTTGTTCTACCCATCCATCTGGTGGAGACAGTGTGCGAGAGATGAAACTTAATGTTCCTGCTGGTGTGTCTGAG TTGCACGAGCTAAAGATTTCTGAATTAACAGTTATGAGTACGAATTCAACAATTATTCCATTGGACAGTGAGTTGCTTCTTACTGGAAGCGCTGCACCTG AAATTTCTGAATTACCAGTGGGAAATGGGAATTCAGGCACAGTGATGATTCCCCAGGACAGTGAGTTGCTTCCACCTGAAAAGACTAATCTTGAAATTTC TACTGAACCTGTTACAAATAGCCACTCAACCACTGCAGTTATCGCCAAGGATAATGAGTCACTTGCATCTGAGAAGTATGTACCTGAAATATCAGGAGAA GTTGCTGTTACTGCATCTGTTGATGACCCTCAGGGACCACCTGATGTGGCACTGCACAATGAGTTATTTAAAGTCCACAGAACTGGCTTCCTTGGAGAAT GTGACACGGGTGAAAGCAAAGAAAGATTTAGGGAACGACTTTGGTGCTTTCTGTTTGAGAATCTCAACTGGGCTGTGGATGAACTCTATCTTCTTTGCGA GCTAGAATGTGATGTTGGACAGATGAAAGAGGCCATTCTTGTTCTTGAAGAAGCTGCATCCGATTTTAAAGAACTGACTAGACGAGTACAGGAGTTTGAG AATGTGAAAAGGTCTTCTCCTCAATCGATTGATGTAAAATGCTTGAAGTCTGAGCATCACAGGCCACATGCTATGTCATGGGAGGTTCGCAGAATGACAA CTTCATCTCAGAGAGCTGAGATACTATCTTCATCTTTGGAGGCTTTTAAGAAAATTCAACAAGAAAGAGCTAACATGCTTGCAGCTAATAATGCAAAAAT TATGGGGCTTGAATACTCCAATAGCCATGATGTATCTGTTGATCATCTCAATAAGTCTGCTGGGAAAAGTGATGTAATGCTCAGTGCCAAAGATTCAGTG ATGAAGTCAAGGAAACAGAGTGGAGGTTCATATTCCACTCAAGGAAACCTGAATAATAAGAAGCAGAACATTGACTTAGGCAGGTTCAATAAAGTAAACT TTGTAAAAAATGTTAATGACGCTCCACGCAATGTATCTTCTTCCAGTGCCAATTCATCTATGCTACTTTTCAGGGATAACTCTGCCTCTGGTTTTGTGAA GGGCATACAAGAAACTGAAGCAGACATGCTGCTTCATAAGAAAGATAAAACATTTTCAGAAACTGCCATTGAGAAAAACCTTAAATCTGCAGAAAATACC ACCAAGAAGCAGATTCCTCTTTCTGAGAAAGACAAGGAAAGGAGAAATTCAAGTTCAAGGAAATCAATGGATGCATGGAAAGAGAGGAGGAATTGGGAGG ACATTCTCTCATCTCCTTTCTGTGTCTCTTCTCGCTTATCAAATTCACCAGGCATTAGCAGAAAAAGTGCTGAGCGCGCACGCATTTTGCATGCTAAACT AATGTCTCCTGATAAGAAGAAGAAAACTGCTTTTGATCTGAAAAGGGAAGCAGAAGAAAAACATGCACGGGCTATGAGGATCAGAAGTGAGCTGGAGAAT GAAAGGGTTCAAAAGCTTCAGCGCACCTCAGAAAAACTAAATCGTGTAAATGAATGGCAGGCTGTACGCACTATGAAGTTACGAGAAGGAATGTATGCTC GCCACCAGCGTAGTGAATCTCGACATGAAGCTTTTCTAGCTCAAGTTGTGAGGAGAGCTGGTGATGAAAGCAGTAAGGTTAATGAGGTTCGTTTCATTAC TTCCTTGAATGAAGAAAACAAGAAGCTTATGCTGCGTCAGAAACTTCACGATTCAGAGTTGAGGAGAGCTGAAAAGCTTCAAGTGATAAAAACTAAACAA AAAGAGGATATGGCTAGAGAGGAGGCTGTTTTAGAACGCAGAAAACTTATTGAAGCTGAGAAGTTACAGCGTCTTGCTGAAACACAGCGAAAAAAGGAAG AGGCACAAGTTAGAAGGGAAGAGGAACGCAAAGCATCAAATGCAGCACGTGAAGCAAGGGCAATCATTCAGCTTCGGAGGAGGGAGGAAAGAGCGAAAGC ACAGCAAGAGGAAGCTGAGCTGCTGGCACAGAAATTAGCTGAGAGACTTAGTGAAAGTGAACAGCGTCGCAAATTTTACCTGGAGCAAATACGGGAGAGA GCTTCTATGGATTTCAGGGATCAATCTTCACCTTTAATGCGCCGATCAATGTATAAGGAGGGTCAAGGTCGAACAACACCAACCAATAGCAGTGAAGATT ATCAAGTAAACAATGTTACAGGGGCAGGAAGTTCTACTCTTGCTGCAGGAAAAGCATTGTTGCAACATTCAATGAAACGGCGGATTAAAAAGATTCGGCA AAGACTTATGGCTCTCAGATATGAGTTCACCGAGCCTCTAGCTAGTTCTGAGAATACTAGCATTGGGTATAGAATGGCTGTGGGAACTGCCAGAGCAAAA TTTGGGAGGTGGCTTCAAGAACTTCAAAGACTTCGGCAGGCAAGAAAAAAAGGTGCCGCAAGTATTGGTCTAATAACAGCTGAAATGATCAAGTTTGTGG AGGGTAAGGATCCTGAGCTGCAAGCTTCTCGACAAGCTGGTCTGCTTGATTTCATTGCTGCTGCTCTGCCTGCCTCTCATACATCAAATCCTGAAACTTG CCAGGTCACCATACACCTCCTGAAACTTTTGAGGGTGGTACTCTCAGCGCCTGCAAACAGGAGTTACTTTCTGTCACAGAATCTCTTACCCCCAATCATC CCCATGCTGTCTGCAGCCCTTGAGAATTATATAAAGATTGCTGCATCTTTAAATGTCCCTGGGAGCACCAACTTGCAATCAAGCAAAACATCAGTTGAAA ATTTTGAATCAATCTCTGAAGTTCTCGATAACTTCTTGTGGACTGTTGGGACAGTTATTGGTCATGCAAGTTCCGATGAACAACAAGTCCAAATGCAAGA TGGCTTGCTAGAGCTATTGATTGCATACCAAGTTATTCATCGACTGCGGGATCTTTTTGCACTTTATGACAGGCCACAGGTGGAAGGATCACCATTTCCT TCTTCTATTCTCTTGAGTATACATCTATTGGTGGCTCTAACATACAGACCTGGAACCAATAGTTCCATTAATTGGGAATCTTCTCCAGTCAAGACAGTGC TGAGATTTGAAAATCAAGAGGCCAAGCCCGTAGAAAATGCTGATTTTCAGTATTCCTCAGCAGTTGTGACTTCTGAAGATTATAGACCTACACTATTTGT ACTAAATTGTAGCACAGTTGTATCACCTCCAAATGTGTCAGATGATATACACATAGATGAGTCCTGTAATATAAATGAAATTAAGGAGTCAGTATCCCTT AGCAAAGATGGTGAACAGAAGCCACATAGTTCTGTTGAGTTGAATATCGCCAACACAAACACAAGAGATGGTCAAGATGAAGCTCAGAAAAATCTGATTG AGGAGAAGGATGAGAAACAGTTTGTCAGTGATTGTGCAGAGCACAAGAATAATGTCATGTTGAACATGAAGGAACCGGTAGCTTTTCTCCTTTCTGCCAT ATCTGAAACTGGACTAGTCAGTCTTCCTTCTCTGTTGACAGCTGTGCTTCTTCAGGCAAACAACAGATTAACCTCGGAACAGGGCTCATATATCCTTCCA TCTAATTTTGAAGAGGTGGCAACTGGGGTGCTGAAGGTTTTGAATAATTTGGCCCTTTTAGATATTGTATTCATGCAGAGAATGCTGGCTAGGCCAGACC TGAAAATGGAATTTTTTCATTTGATGAGTTTTCTTCTTTCTCATTGCACCAGCAAATGGAAAGTAGCTAATGACCAGGTTGGGTTTCTTCTGCTTGAATG CCTTTCGCTTCTTGGTTATTTTGCCTTGTTCCACTCTGAGAATCAAGCTGTTCTTCGATGGGGAAAAAGTCCCACCATACTTCACAAGATATGCGATCTG CCATTTGTGTTCTTCAGTGACACCGAGCTGATACCAGTTTTGGCCGGCGCACTAGTTGCTGCCTGCTATGGGTGTGAACAGAACAAATGTGTGGTTCAGC AAGAATTGAGCATGGATATGCTAGTTTCGTTGTTACAATCTTGTAGAAATGTTTCGCCAGCAATGCGATCCAATCCAATTGTAGAAAATCTGCCAACAGA AGATGCAAATGAAAGTAATCAGCAGATTTCTGAACTTAAAAAATCATCTCAAGGGGACATTCTTCAAAGATCCAACCGGTACAATTCTAGAAGCATGCGG GTCTCGACGGGGAAAGCTGGTACTTTTGGAAACAGCATCAGAGGTGGCAAGATGAGAAGCCAGAGAGATGGCAAAACAACAAAAACTAGTGAAGAAATGG CTTTGAAACACAATCCAGTAGCTCCTCAAACTTCCATGATGCTGCATTGTAGATTCCCTAGCAGCTTCATGGACAGGGCAGAGCAATTTTTTACAGCAGG GATGACCAACGTGGCAGATGAAGTTTGA
AA sequence Show only first row Show all	>Potri.012G066900.1 pacid=42783650 polypeptide=Potri.012G066900.1.p locus=Potri.012G066900 ID=Potri.012G066900.1.v4.1 annot-version=v4.1 MENTGEAVDDQGSGWFQVKKKHRSSSKFSLHSSAAGFSEKNGSSCHITQPSSSEKNRNLCGKHVSHHSKGGPNHSINGCGNSANSSSVSNQDENRVFLPH KLLVTQHGEDSGCSKLSPVLITNSNAKVGDTQKMLLKDKPDVPKIKWGDLEDDLLILHGENNSQVVKKFVGEGNNNLVDRMPENNCHFVSHVSSSSNLQE NRLVASSVNVDISPDQTFPFTNKEDLHGKNSKDVSETSSQDVEVPSTDGRMVVPNYPQNCKEKITENSKTTDDDFSCSTHPSGGDSVREMKLNVPAGVSE LHELKISELTVMSTNSTIIPLDSELLLTGSAAPEISELPVGNGNSGTVMIPQDSELLPPEKTNLEISTEPVTNSHSTTAVIAKDNESLASEKYVPEISGE VAVTASVDDPQGPPDVALHNELFKVHRTGFLGECDTGESKERFRERLWCFLFENLNWAVDELYLLCELECDVGQMKEAILVLEEAASDFKELTRRVQEFE NVKRSSPQSIDVKCLKSEHHRPHAMSWEVRRMTTSSQRAEILSSSLEAFKKIQQERANMLAANNAKIMGLEYSNSHDVSVDHLNKSAGKSDVMLSAKDSV MKSRKQSGGSYSTQGNLNNKKQNIDLGRFNKVNFVKNVNDAPRNVSSSSANSSMLLFRDNSASGFVKGIQETEADMLLHKKDKTFSETAIEKNLKSAENT TKKQIPLSEKDKERRNSSSRKSMDAWKERRNWEDILSSPFCVSSRLSNSPGISRKSAERARILHAKLMSPDKKKKTAFDLKREAEEKHARAMRIRSELEN ERVQKLQRTSEKLNRVNEWQAVRTMKLREGMYARHQRSESRHEAFLAQVVRRAGDESSKVNEVRFITSLNEENKKLMLRQKLHDSELRRAEKLQVIKTKQ KEDMAREEAVLERRKLIEAEKLQRLAETQRKKEEAQVRREEERKASNAAREARAIIQLRRREERAKAQQEEAELLAQKLAERLSESEQRRKFYLEQIRER ASMDFRDQSSPLMRRSMYKEGQGRTTPTNSSEDYQVNNVTGAGSSTLAAGKALLQHSMKRRIKKIRQRLMALRYEFTEPLASSENTSIGYRMAVGTARAK FGRWLQELQRLRQARKKGAASIGLITAEMIKFVEGKDPELQASRQAGLLDFIAAALPASHTSNPETCQVTIHLLKLLRVVLSAPANRSYFLSQNLLPPII PMLSAALENYIKIAASLNVPGSTNLQSSKTSVENFESISEVLDNFLWTVGTVIGHASSDEQQVQMQDGLLELLIAYQVIHRLRDLFALYDRPQVEGSPFP SSILLSIHLLVALTYRPGTNSSINWESSPVKTVLRFENQEAKPVENADFQYSSAVVTSEDYRPTLFVLNCSTVVSPPNVSDDIHIDESCNINEIKESVSL SKDGEQKPHSSVELNIANTNTRDGQDEAQKNLIEEKDEKQFVSDCAEHKNNVMLNMKEPVAFLLSAISETGLVSLPSLLTAVLLQANNRLTSEQGSYILP SNFEEVATGVLKVLNNLALLDIVFMQRMLARPDLKMEFFHLMSFLLSHCTSKWKVANDQVGFLLLECLSLLGYFALFHSENQAVLRWGKSPTILHKICDL PFVFFSDTELIPVLAGALVAACYGCEQNKCVVQQELSMDMLVSLLQSCRNVSPAMRSNPIVENLPTEDANESNQQISELKKSSQGDILQRSNRYNSRSMR VSTGKAGTFGNSIRGGKMRSQRDGKTTKTSEEMALKHNPVAPQTSMMLHCRFPSSFMDRAEQFFTAGMTNVADEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.012G066900 [exp]	0	1
AT3G50370			unknown protein		Potri.005G137700 [exp]	3.46	0.8984
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	4.00	0.8683
AT5G45190			Cyclin family protein (.1.2)		Potri.001G081600 [exp]	5.19	0.8271
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.017G047600 [exp]	6.32	0.8746
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.012G088500 [exp]	8.48	0.8496
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	8.94	0.8531
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	9.16	0.8586
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	9.48	0.8746
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.014G189900 [exp]	9.79	0.8619
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	11.66	0.8574

Compare expression of checked genes

Potri.012G066900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.