Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHR919
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07810 1185 / 0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) AT1G48310 216 / 6e-59 CHR18, CHA18 chromatin remodeling factor18 (.1) AT2G28290 91 / 7e-18 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G31900 85 / 3e-16 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT5G44800 83 / 1e-15 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT1G03750 74 / 7e-13 SWI2, SNF2, CHR9 CHROMATIN REMODELING 9, switch 2 (.1) AT3G57300 73 / 1e-12 ATINO80 INO80 ortholog (.1.2) AT2G13370 71 / 4e-12 CHR5 chromatin remodeling 5 (.1) AT5G66750 70 / 8e-12 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT3G54280 70 / 1e-11 RGD3, ATBTAF1, CHR16, CHA16 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G003300 [exp] 224 / 1e-61 AT1G48310 932 / 0.0 chromatin remodeling factor18 (.1) Potri.008G195900 [exp] 98 / 3e-20 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.010G019150 [exp] 96 / 2e-19 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G123400 [exp] 86 / 1e-16 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.003G110100 [exp] 85 / 3e-16 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.006G262200 [exp] 80 / 1e-14 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 75 / 3e-13 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.016G043500 [exp] 74 / 7e-13 AT3G57300 2157 / 0.0 INO80 ortholog (.1.2) Potri.006G047100 [exp] 74 / 8e-13 AT3G57300 2135 / 0.0 INO80 ortholog (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003469 [exp] 1309 / 0 AT5G07810 1276 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) Lus10015736 [exp] 278 / 5e-82 AT5G07810 281 / 9e-84 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) Lus10006642 [exp] 203 / 1e-54 AT1G48310 834 / 0.0 chromatin remodeling factor18 (.1) Lus10039409 [exp] 117 / 3e-26 AT1G48310 778 / 0.0 chromatin remodeling factor18 (.1) Lus10013625 [exp] 95 / 3e-19 AT3G54280 2684 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) Lus10012798 [exp] 89 / 2e-17 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10038363 [exp] 84 / 8e-16 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10036223 [exp] 82 / 3e-15 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10031050 [exp] 76 / 3e-13 AT3G57300 2115 / 0.0 INO80 ortholog (.1.2) Lus10014047 [exp] 75 / 4e-13 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0263 [poplar] [flax] His-Me_finger PF01844 [poplar] [flax] HNH HNH endonuclease
Representative CDS sequence Show only first row Show all	>Potri.012G067000.1 pacid=42784177 polypeptide=Potri.012G067000.1.p locus=Potri.012G067000 ID=Potri.012G067000.1.v4.1 annot-version=v4.1 ATGCAAATCACAGAGGAGCAAAGACAGAGATCTGAAGCCAACAGATTAGCAGCCTTAGAAAAGAGAAAAGCATACATCATCAATCAGCAGCAGCAGCAGC AGCCGCCGCCGCCGCAAAACCCATGGAGACTTTTCAAGTGCCGAAAGCTCTCTCCCAAACCGTCCTCCAGTAAAACCACCACAAACCCGCCTCTTTTTAA CCGGGTCAACCCGGATTTAGATACCCATTTGCCCCAAACTTTCCGGGTCCGCCTCGAAATTTGCTCGCCTGACTCCTTCTCTATCACCCCAGAGGCTATG AAGGGATTCCCCTATCCTGGGGAAGAAAAATGTTTAAATACTTTAAAATCTCGCTTATCCAATGCAATGGAACCTCGTTATACACAAATTAATGGAGGTG GAAGGGCCTGTGTGTATAATATCAGAGACTATGATGTAGTTTTGACGTGTTTAAAGAATTGCAAGGGAATCGAAATCGAAAAGATCCCTTTCACCACACT TAATATTATCCAAAGACTTTCAAACTCTTTCGATGCTGGTCGATGGGAACCCTGCAGGCCTGAACATTTCACTGATGAAAAGGTGGATGAATTCATTCGG ATGCTGCCGAGAAAGCTCTTGGATGTACTCTTACCTTTCCAACATGATGGCTTAAGATTTGGTTTGAGAAGGGGTGGTCGGTGTCTTATTGCAGATGAAA TGGGCCTTGGTAAAACACTTCAGGCAATTGCTATTGCTGGCTGTTTCATAAATGAAGGCCCCATCCTTGTTGTTTGCCCAGCTATTTTGCGGTTTTCTTG GGCAGAAGAGTTAGAGCGATGGATGCCCTTTTGTTTACCCTCTGAGATCCACCTTGTTTTTGGTCATCGCACTAATCCTATGCATCTAACAAGATGCCCA AAAGTTGTGGTTATCTCTTACACAATGCTTCATCACTTGCGGAAGACCATGCTTGAGCAAGAATGGGCTCTCTTGATAGTGGATGAATCTCACCATGTTC GTTGTTCAAAAAATAAGTCAGAGCCAAATGAGATAAAAGCAGTTCTAGATGTGGCAGAAAAGGTCAAGCGCATAGTTCTTCTGTCTGGGACACCTTCTCT GTCCAGGCCATTTGACATTTTTCATCAGATAAACATGTTATGGCCTGGTTTGCTGGGGCAGAACAAGTATGATTTTGCGAAAACTTACTGTGCTCTCAGA CTTGTCCGCACTTATGAAGGAAAAGGTTTTCAGGATTTCTCGAAGGGCATTCGTTTGGAGGAACTGAATGTGTTGCTTAGGCAAACTGTTATGATACGAC GTTTGAAGGAGCATGTACTGAAACAATTACCACCAAAACGTCGGCAAATAATAAGATTGCTGTTGAAAAGATCAGATATAATTTCAGCAAAGGCTGCATG TGGGGGGTTGGTGAATCATGATGCCTCTGAAAGAAATGCTGCTGAAGTGATAAATTCAGAGAACATAGATGGATCTGATGAAAGCGGGGGTTGTTGCAGA TCCAAGAAACTCTCCTACCAAGAGCTTGGCATTGCAAAATTGTCTGGGTTTTGTGAATGGCTTTCCATTCATCCTCTCATTTCAGAGTCAGATGGTGTAG CAAAATTGGATGTAAACCATAGTTCTCAGAAAATGATAATTTTTGCTCATCACCTAAAAGTTCTTGATGGAGTTCAGGAATTTGTACATGAGAAAGGGGT TGGTTTTGTCCGCATTGATGGAAACACTCTTGCCAGTGATAGGCAAAACGCTGTATTGTCATTTCAATCATCAAATAAGGTTAAGATTGCAATAATCGGT ATAACTGCTGGGGGTGTCGGACTTGATTTCTCCTCGGCACAAAATGTTGTCTTCTTGGAGCTGCCTCAGTCTCCATCATTGATGCTTCAGGCCGAGGACA GAGCTCACAGGCGAGGGCAATCAAATGCAGTTAACATTTACATCTTCTGTGCTAAGGACACTATGGACGAAACATGTTGGCAAAATTTAAACAAGAGTTT GCATCGTGTCTCATCTATTACGGATGGAAAATATGATGCAGTTCCAGAAATTTTGGTTGAAAGAATTTCTTATTTTGGAAAATCTGACAAAGGGATTAGG AGAAGTTCTGAAGTTCAAGTTAAGTTGCCAGACTCTGGCTCAGTGTGGGATTCACAGCCATTCAAAACGGACGATGAAGAGAATGTAATGTTGATTGGAA GCACATTTCAAACAGATGATCTTAATCTTGGGGCTGTTATGGTCTTGGATAATGTAACAGACAAGGATTCTGTTGCAAATAAAAACCTAGAAGGGATTTC AGAAATTGAGATTAGAAGTTCTAGCAGAGTTTCTTCTTCTGAGTCATCTGAGGGACATGAAGGCAATGATCAATCAGAGAAGGAAAATAAACTTTGTGTC CAAACAACAGAAACCAATGACAGTGAACTTGCTCAGCAAAATGAAGCTGATGAATGCTGGTCTAACGAAGTATATTCTCTACGCTTTGAGGTAAGTAAAT ATACTGGAAGGATTCACCTATATTCCTGCATTCTGGGGAAAGATTCAAGACCACAGCCACTTTATGAGAATTTCCAACCAGAAGAACTCGAGTCACTTAA TTTACCAGCAGCTAATGATAGCAAGGAAACAGATTTTAAATTTCTCAAGGGAAATCCAGTTTCCAGGCATGCTCTTCTTTCATTTATTAAAGAGTGGAAT GCACTAAGGCCTATTGAAAGAAGGAAATTACGTGGAAAGACTTTGCAACTCCCTCTACGTGTTGAGTTGTGCTACTTAAATGAAAGCACTAACCACAAAA TTGGGGGACTGCTGAAGGGTGGAAGCAAGCGACGCCTTACTCCATTGGGTGAGATCAGCCATCCTTTACCATCCAATGCCATTTTGAAAAAGGTGCATCT GTCAAGTAGCTATGGCCAAAAGGAAAAGCAATACACTCAGGGTTGGACCTTGATGGATGAGCCACTCTGTAAACTCTGTCAAATGCCATGCAAGGGCAGC AATGCCAAAACACCTGTGTATTTTGAGGATCTATTCTGCAATCTCATCTGCTGTGAAGAATATCGCTTAAGAACTAGTAGCAGATCCCTCCGGCAGGAGC TTTTTGAAATAGAACATGGTGTCTGCACAATTTGCCAGCTAGACTGTCATCAACTTGTGAGGACCATCAAACCTTTATCATTAGAGAGACGACGGGAGTA TATTGAGGAAGTAGCGCCAAATGTGGCAAGTCAGAAGAAATTGCTCGATAAGCTTGCCAATGATCCATCTGAGGGCAATGCATGGCATGCAGACCATATT GTTCCTGTTTACCGTGGTGGAGGTGAATGCAAACTAGAGAATATGAGGACTCTTTGTGTGGCATGCCATTCCAATGTTACTGCAGCCCAACGTGCTGAAC GATGCTCAACTAGGGAAAAGGCTAGGAAGCAACTAGAAGTCATCATGAATGACATCAAATGTATGGAAGAAGAGACTTCGACTTATGTGAAGGGCCAAGG GCATCCTCAAATGCAAGAGGAGGATTTAGTTGATGACCTCTTAGTCAAGGTTCCTGGAAGTGCCTACTCTAGAGGACAAAGCACAGATCCTGAAAGTGAA GATATGAAGAAGAGCTCTTAG
AA sequence Show only first row Show all	>Potri.012G067000.1 pacid=42784177 polypeptide=Potri.012G067000.1.p locus=Potri.012G067000 ID=Potri.012G067000.1.v4.1 annot-version=v4.1 MQITEEQRQRSEANRLAALEKRKAYIINQQQQQQPPPPQNPWRLFKCRKLSPKPSSSKTTTNPPLFNRVNPDLDTHLPQTFRVRLEICSPDSFSITPEAM KGFPYPGEEKCLNTLKSRLSNAMEPRYTQINGGGRACVYNIRDYDVVLTCLKNCKGIEIEKIPFTTLNIIQRLSNSFDAGRWEPCRPEHFTDEKVDEFIR MLPRKLLDVLLPFQHDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFINEGPILVVCPAILRFSWAEELERWMPFCLPSEIHLVFGHRTNPMHLTRCP KVVVISYTMLHHLRKTMLEQEWALLIVDESHHVRCSKNKSEPNEIKAVLDVAEKVKRIVLLSGTPSLSRPFDIFHQINMLWPGLLGQNKYDFAKTYCALR LVRTYEGKGFQDFSKGIRLEELNVLLRQTVMIRRLKEHVLKQLPPKRRQIIRLLLKRSDIISAKAACGGLVNHDASERNAAEVINSENIDGSDESGGCCR SKKLSYQELGIAKLSGFCEWLSIHPLISESDGVAKLDVNHSSQKMIIFAHHLKVLDGVQEFVHEKGVGFVRIDGNTLASDRQNAVLSFQSSNKVKIAIIG ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQSNAVNIYIFCAKDTMDETCWQNLNKSLHRVSSITDGKYDAVPEILVERISYFGKSDKGIR RSSEVQVKLPDSGSVWDSQPFKTDDEENVMLIGSTFQTDDLNLGAVMVLDNVTDKDSVANKNLEGISEIEIRSSSRVSSSESSEGHEGNDQSEKENKLCV QTTETNDSELAQQNEADECWSNEVYSLRFEVSKYTGRIHLYSCILGKDSRPQPLYENFQPEELESLNLPAANDSKETDFKFLKGNPVSRHALLSFIKEWN ALRPIERRKLRGKTLQLPLRVELCYLNESTNHKIGGLLKGGSKRRLTPLGEISHPLPSNAILKKVHLSSSYGQKEKQYTQGWTLMDEPLCKLCQMPCKGS NAKTPVYFEDLFCNLICCEEYRLRTSSRSLRQELFEIEHGVCTICQLDCHQLVRTIKPLSLERRREYIEEVAPNVASQKKLLDKLANDPSEGNAWHADHI VPVYRGGGECKLENMRTLCVACHSNVTAAQRAERCSTREKARKQLEVIMNDIKCMEEETSTYVKGQGHPQMQEEDLVDDLLVKVPGSAYSRGQSTDPESE DMKKSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	0	1	CHR919
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.009G050600 [exp]	2.64	0.7682
AT2G21630			Sec23/Sec24 protein transport ...		Potri.002G238500 [exp]	2.82	0.8125
AT5G07380			unknown protein		Potri.015G109700 [exp]	3.00	0.7511
AT5G49110			unknown protein		Potri.010G011800 [exp]	3.74	0.8288
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.006G160400 [exp]	4.69	0.7495
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	4.89	0.7465
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Potri.005G067100 [exp]	5.09	0.7453
AT5G07740			actin binding (.1)		Potri.012G067900 [exp]	5.91	0.7735
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.015G146300 [exp]	9.16	0.7289
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Potri.003G021700 [exp]	11.13	0.7738

Compare expression of checked genes

Potri.012G067000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.