Plant FIBer expression Database

Potri.012G067200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G29270 271 / 3e-91 RING/U-box superfamily protein (.1.2)
AT1G74370 228 / 2e-74 RING/U-box superfamily protein (.1)
AT1G69330 225 / 2e-73 RING/U-box superfamily protein (.1)
AT1G21651 41 / 0.0006 zinc ion binding (.1)
AT1G21650 41 / 0.0007 SECA2 Preprotein translocase SecA family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G090000
[exp]
273 / 2e-92 AT3G29270 281 / 2e-95 RING/U-box superfamily protein (.1.2)
Potri.004G125400
[exp]
252 / 6e-84 AT3G29270 283 / 4e-96 RING/U-box superfamily protein (.1.2)
Potri.010G161100
[exp]
225 / 3e-73 AT1G69330 263 / 5e-88 RING/U-box superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015732
[exp]
285 / 1e-96 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2)
Lus10003473
[exp]
261 / 1e-87 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2)
Lus10005220
[exp]
225 / 4e-73 AT3G29270 317 / 3e-109 RING/U-box superfamily protein (.1.2)
Lus10030699
[exp]
221 / 1e-71 AT3G29270 310 / 5e-107 RING/U-box superfamily protein (.1.2)
Lus10004666
[exp]
201 / 6e-64 AT1G69330 272 / 1e-91 RING/U-box superfamily protein (.1)
Lus10026648
[exp]
197 / 1e-59 AT1G69330 275 / 2e-89 RING/U-box superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF13445 zf-RING_UBOX RING-type zinc-finger
Representative CDS sequence
>Potri.012G067200.3 pacid=42782943 polypeptide=Potri.012G067200.3.p locus=Potri.012G067200 ID=Potri.012G067200.3.v4.1 annot-version=v4.1
ATGTTGGATTTTGCTTCCAAATTCATTAGAGGAACCATTAGGTTGAAGCATGACTTTTTAAAGCCAAGGCAAGCTCTTTCAGGTCAGTGCTCAGATGATG
AACCTTCTTTAAACAGCAGCAGAGAGGACAGATTGGAATGCCCAATTTGCTGGGAATCCTTCAATATTGTGGAGAATGTTCCTTATGTTTTATGGTGCGG
TCACAGCCTCTGTAAGAATTGTGTGCTAGGCCTGCAATGGGCCCTTGTTAAACTCCCCACACTACCTATCCTGCTTCCGTTTTTCATCTCTTGTCCATGG
TGTAATATGTTATCATTCAGGCTTGTTTACAAGGGGATTCTCAGATTCCCTTGTAAAAATTATTTTCTTTTGTGGATGGTTGAGAGCATGAATGGTGATA
GGTCATCTTTCTCCTCATTCCACAATGATCATCAGCCTGTCGCTCCCTTGAACAATAATCCAACCACAGGAAATCAGGTTAACCCCGAAGTAGGGAACAG
GCATGCCATGCGCGTTCAAATCCCTTCAGAACAATCCCTACCTAACCGCGACCCTAGCTACTTCAATTCTGAGAGACTTCACTTATCACTCCGCAAGTCT
CTGGTATTTTTTGCTCACATGACAGCTAAGTTTCCATTAATCGTCATGTTTCTTCTGATTGTTCTGTATGCAATACCCACTAGTGCCGCGATCTTAGCCC
TCTACATCCTTATCACTCTTGTGTTTGCCCTCCCTTCTTTTCTCATCTTGTACTTTTCCTTACCTAGTCTGGATTGGCTGGTCAGAGAAATCATCACCTG
A
AA sequence
>Potri.012G067200.3 pacid=42782943 polypeptide=Potri.012G067200.3.p locus=Potri.012G067200 ID=Potri.012G067200.3.v4.1 annot-version=v4.1
MLDFASKFIRGTIRLKHDFLKPRQALSGQCSDDEPSLNSSREDRLECPICWESFNIVENVPYVLWCGHSLCKNCVLGLQWALVKLPTLPILLPFFISCPW
CNMLSFRLVYKGILRFPCKNYFLLWMVESMNGDRSSFSSFHNDHQPVAPLNNNPTTGNQVNPEVGNRHAMRVQIPSEQSLPNRDPSYFNSERLHLSLRKS
LVFFAHMTAKFPLIVMFLLIVLYAIPTSAAILALYILITLVFALPSFLILYFSLPSLDWLVREIIT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G29270 RING/U-box superfamily protein... Potri.012G067200
[exp]
0 1
AT5G02570 Histone superfamily protein (.... Potri.009G028001
[exp]
2.44 0.7128
AT4G28610 GARP ATPHR1, PHR1 phosphate starvation response ... Potri.002G257800
[exp]
3.87 0.6838
AT3G28920 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, hom... Potri.017G082900
[exp]
4.00 0.6935
AT3G19950 RING/U-box superfamily protein... Potri.007G074014
[exp]
7.34 0.6791
AT2G05630 ATG8D Ubiquitin-like superfamily pro... Potri.014G153800
[exp]
7.74 0.7069
AT5G49900 Beta-glucosidase, GBA2 type fa... Potri.019G072800
[exp]
13.26 0.6422
AT1G24040 Acyl-CoA N-acyltransferases (N... Potri.008G146000
[exp]
24.45 0.7109
AT1G06650 2-oxoglutarate (2OG) and Fe(II... Potri.010G073100
[exp]
26.45 0.6146
AT3G15140 Polynucleotidyl transferase, r... Potri.003G194300
[exp]
27.71 0.6316
AT5G61340 unknown protein Potri.004G102800
[exp]
28.28 0.6271

Potri.012G067200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.