Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07800 696 / 0 Flavin-binding monooxygenase family protein (.1) AT5G61290 658 / 0 Flavin-binding monooxygenase family protein (.1) AT1G62620 422 / 3e-145 Flavin-binding monooxygenase family protein (.1) AT1G63370 421 / 1e-144 Flavin-binding monooxygenase family protein (.1) AT1G12200 386 / 7e-131 FMO flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) AT1G62560 385 / 1e-130 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT1G62600 380 / 1e-128 Flavin-binding monooxygenase family protein (.1) AT1G62570 371 / 4e-125 FMOGS-OX4 ,FMO GS-OX4 flavin-monooxygenase glucosinolate S-oxygenase 4 (.1) AT1G65860 368 / 1e-123 FMOGS-OX1 ,FMO GS-OX1 flavin-monooxygenase glucosinolate S-oxygenase 1 (.1) AT1G12140 366 / 6e-123 FMOGS-OX5 ,FMO GS-OX5 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G121100 [exp] 412 / 6e-141 AT1G62600 607 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.013G019900 [exp] 370 / 2e-124 AT1G62600 513 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.001G121000 [exp] 369 / 2e-124 AT1G12200 557 / 0.0 flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) Potri.006G137600 [exp] 80 / 9e-16 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 75 / 4e-14 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.007G028200 [exp] 71 / 5e-13 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G115800 [exp] 71 / 7e-13 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.002G254200 [exp] 69 / 2e-12 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.006G060200 [exp] 69 / 3e-12 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015731 [exp] 662 / 0 AT5G07800 621 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10003474 [exp] 652 / 0 AT5G07800 623 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10024598 [exp] 400 / 2e-136 AT1G62620 587 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10024609 [exp] 308 / 2e-101 AT1G62560 444 / 1e-154 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) Lus10032247 [exp] 243 / 2e-77 AT1G12140 315 / 1e-105 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) Lus10032235 [exp] 76 / 6e-17 AT1G62600 117 / 2e-32 Flavin-binding monooxygenase family protein (.1) Lus10005178 [exp] 73 / 2e-13 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10024023 [exp] 72 / 3e-13 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10038126 [exp] 72 / 3e-13 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10041729 [exp] 71 / 8e-13 AT5G25620 473 / 6e-166 YUCCA6, Flavin-binding monooxygenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF07992 [poplar] [flax] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.012G067500.1 pacid=42782563 polypeptide=Potri.012G067500.1.p locus=Potri.012G067500 ID=Potri.012G067500.1.v4.1 annot-version=v4.1 ATGGTTTCTCCGCTGAGCCTATCAAAAAAAGTGTGCGTTATTGGTGCCGGACCATCGGGGCTAGTGGCCGCGAGGGAGTTGAGAAAAGAAGGTCACAATG TTGTGGTTTTAGAACAAAGATACGATGTTGGTGGTCAATGGTTATATGAGCCTAATGTAGAGAGTGAGGATCCGTTAGGTAAGAAAAAGTTTTTACAAGT GCATAGTAGTATTTATGCCTCTCTTAGGTTAATATCTCCTAGGGAGATCATGGGTTTCACTGATTTCCCATTTTTGGTCAAGAAAGGTAGAGACACTAGG AGGTTTCCTGGGCATAGGGAACTTTGGTTGTACCTTAAGGATTTTTGTGAGCACTTTGGTTTGAGGGAAATGATCAGGTTTAACACTAGTGTAGAATACG TACGGATGTTAGAGTATGATGAGATCGGGAAAGACTTGAAATGGATGGTGAAGAGCAGAGACAAAAGCAGCGAAGAAATGGCGGTGGAAGAGGTTTTTGA TGCGGTTGTCGTGGCTACTGGTCACTACTCTCATCCTAGGTTGCCTACCATTAAAGGGATGGATACTTGGAAAAGGAAGCAAATGCATAGTCACATTTAC AGGGTTCCAGAGCCGTTCCGCAATGAGGTTGTTGTGGTTGTGGGAAATTCGCTAAGCGGACAGGATATATCAATGGAGCTTGTGGAAGTGGCCAAGGAAG TCCACCTTAGTGCCAAATCTCTTAATATTACAGAGGGTTTATCGAAAGTCATCTCTAAACACGAGAACTTGCATCTCCATCCACAGATCGAGACTCTCCA AGAAGATGGTCGAGTTGTGTTTGTAGATGGCTCTTGGCTCATTGCCGACACTATCTTACACTGCACAGGGTATTCATACACATTCCCATTTCTTGACACC AAAGGGATGGTAGCTGTGGATGATGATAGAGTGGGACCCTTGTATGAGCACACCTTCCCTCCAGCGCTTGCTCCTTCTCTTTCTTTTGTAGGCATACCCA GAAAGATCATAGGGTTCCCTTTCTTTGAGGCCCAAGCAAAATGGATTGCTCAACTACTTTCAGGGAAAAGAACGTTGCCATCACGGGAGGAAATGATGCA CTCCATTGAGGAATTCTATAGATCAAGGGATGCTGCTGCCATTCCAAAGCATTATACCCATGACATTGGAGATTTTGAGTACTGTGATAGATATGGCGAT CATATTGGGTTCCCACACTTGGAAGAATGGAGAAAACAACTTTGCTTGTCGGCCTTGGTAAATGCTGATGCCAACTTGGAGGCGTACCGTGACTCGTGGG AGGATCATGAGCTGCTTCAAGAGGCTCTTCAAAGTCCTCATTTCACTCAACTTGGAGCTGAAGACCTCACATTTTAA
AA sequence Show only first row Show all	>Potri.012G067500.1 pacid=42782563 polypeptide=Potri.012G067500.1.p locus=Potri.012G067500 ID=Potri.012G067500.1.v4.1 annot-version=v4.1 MVSPLSLSKKVCVIGAGPSGLVAARELRKEGHNVVVLEQRYDVGGQWLYEPNVESEDPLGKKKFLQVHSSIYASLRLISPREIMGFTDFPFLVKKGRDTR RFPGHRELWLYLKDFCEHFGLREMIRFNTSVEYVRMLEYDEIGKDLKWMVKSRDKSSEEMAVEEVFDAVVVATGHYSHPRLPTIKGMDTWKRKQMHSHIY RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNITEGLSKVISKHENLHLHPQIETLQEDGRVVFVDGSWLIADTILHCTGYSYTFPFLDT KGMVAVDDDRVGPLYEHTFPPALAPSLSFVGIPRKIIGFPFFEAQAKWIAQLLSGKRTLPSREEMMHSIEEFYRSRDAAAIPKHYTHDIGDFEYCDRYGD HIGFPHLEEWRKQLCLSALVNADANLEAYRDSWEDHELLQEALQSPHFTQLGAEDLTF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07800			Flavin-binding monooxygenase f...		Potri.012G067500 [exp]	0	1
AT3G62160			HXXXD-type acyl-transferase fa...		Potri.014G113600 [exp]	1.00	0.8472
AT2G33640			DHHC-type zinc finger family p...		Potri.002G006900 [exp]	4.00	0.8043
AT2G18420			Gibberellin-regulated family p...		Potri.005G239000 [exp]	5.47	0.7941
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.013G123800 [exp]	7.74	0.8114
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Potri.005G256000 [exp]	8.83	0.8045	XCP2.1
AT5G54530			Protein of unknown function, D...		Potri.011G129900 [exp]	9.21	0.7956
AT5G40020			Pathogenesis-related thaumatin...		Potri.017G075500 [exp]	11.31	0.7742
AT1G04650			unknown protein		Potri.001G053000 [exp]	12.68	0.7939
AT5G18460			Protein of Unknown Function (D...		Potri.013G050100 [exp]	13.26	0.7593
AT1G58070			unknown protein		Potri.004G222800 [exp]	15.58	0.7709

Compare expression of checked genes

Potri.012G067500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.