Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74360 1013 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G01950 372 / 7e-114 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT1G55610 348 / 7e-105 BRL1 BRI1 like (.1.2) AT1G17230 344 / 6e-104 Leucine-rich receptor-like protein kinase family protein (.1) AT3G13380 345 / 9e-104 BRL3 BRI1-like 3 (.1) AT5G65700 338 / 2e-102 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 332 / 2e-100 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G26330 328 / 7e-99 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07180 325 / 9e-98 ERL2 ERECTA-like 2 (.1) AT2G33170 325 / 6e-97 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061600 [exp] 1280 / 0 AT1G74360 1375 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G140500 [exp] 380 / 5e-117 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 369 / 4e-113 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.001G472900 [exp] 363 / 2e-110 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.011G169600 [exp] 358 / 2e-108 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.007G078100 [exp] 352 / 3e-106 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G132200 [exp] 344 / 5e-105 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.012G130400 [exp] 340 / 2e-103 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.004G223900 [exp] 334 / 4e-101 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003478 [exp] 746 / 0 AT1G74360 999 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 376 / 3e-115 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 372 / 4e-114 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10020835 [exp] 369 / 2e-112 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 369 / 2e-112 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039132 [exp] 363 / 8e-111 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10015729 [exp] 357 / 1e-108 AT1G74360 539 / 2e-173 Leucine-rich repeat protein kinase family protein (.1) Lus10006817 [exp] 355 / 1e-107 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011576 [exp] 337 / 3e-103 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 336 / 2e-101 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G067600.2 pacid=42783457 polypeptide=Potri.012G067600.2.p locus=Potri.012G067600 ID=Potri.012G067600.2.v4.1 annot-version=v4.1 ATGGGGAGATTCACACAGCTGAAGTTTCTAGTGTTACATGGGAATTCATATACCGGTGGCTTATATTCTTCAGGCATCCTCAAACTAGCTAATCTTGTTC GATTAGACCTGAGCAACAACAACTTCACGGGTCCATTGCCTGTTGAAATCTCTGAAATGCACAGCTTGAAGTTCTTGATCCTAGCGTATAATCGATTTAA CATCACTATTCCACAAGAGTACGGAAATTTTCAAAACTTGCAAGCTCTCGATCTCTCCTTCAACAACCTAACTGGTCAAATACCATCTTCTCTTGGAAAG TTGAGGTCGCTCTTGTGGTTAATGCTTGCAAACAATAAGTTGACAGGTGAAATTCCACCTGAATTGGGAAACTGCAGTAGTTTGTTGTGGTTGAACCTTG CCAACAACCAGCTCTCTGGCAGTATTCCACATGAATTGATGAATGTTGGAAGGGACCCCACACCAACATTTGAATCAAACAAGCAGGATGAAGGCATCAT TGCTGGCTCTGGTGAGTGTTTGACAATGAAGAGGTGGATTCCTGCAGATTATCCCCCATTCAGTTTTGTATACACAATCCTAAATCGGAAGACATGCAGG AGCATATGGGATAGGTTGCTTAAAGGGGTTGGCCTTTTCCCTGTATGCGCTGCAGGATCTACTGTCCGTACGTTTCAAATCTCAGGTTATCTTCAATTGA GCGGCAACCAGCTTTCTGGAGAGGTCCCAGGAGATATTGGTAAGATGCAGAGTTTCAGTATGTTGCATTTGGGTTTCAATGAGCTCAATGGTAGGCTCCC TCCCCAGATTGGAAAATTGCCACTTGTAGTCCTAAACCTCACCAAAAACAAGTTCTCAGGTGAAATTCCAAATGAAATTGGGAACACCAAATGCTTACAG AATCTGGATTTATCTTACAACAACTTCTCAGGCACGTTTCCTGTTAGCTTAAACAACTTGAGTGAGGTGAGCAAGTTCAACATCTCATACAATCCTTTAA TTTCTGGTACAGTCCCAACAACTGGGCAGATGGCAACATTTGAGAAAGAATCCTACCTTGGTGATCCACTCCTGAAACTTCCCAATTTTATCATCAACTC GATGGATCCTCCGCCCAATGAATATCCCAAAATCAAGAAGAAGGAGAATAAAAAGTGGGTTGCAGTTTTGGTGCTGTTAACAATGACTATGGCTTTCTTA ATCTGCGGACTGGTTTCACTTTTTGTTTGCATGCTGGTGAAAAGCCCACCAGAATCACCAAGATACCTCTTTGAGGATACCAAATACCGCCAGCATGACT TTGAATCAAGTTCAGGGAGTTCATCTCCATGTTTTTCAGATACAGTTAAGGTCATACGTTTGGACAGAACAGCATTCACTCATGCTGACATTTTGAAGGC AACAGACAGTTTTTCAGAAAGTAGAATCATCGGAAAGGGAGGATTTGGAACAGTTTACAGGGGAGTATTGCCTGATGGAAGAGAGGTAGCAATTAAGAAG CTACAAAGAGAAGGAATTGAAGGTGAAAAGGAGTTTAGAGCTGAAATGGAAGTTCTAACCGGAAATGGCTTCGGCTGGCCTCACCCAAACCTTGTGGCAC TTTATGGGTGGTGTCTTTATGGTGCAGAGAAAATATTGGTGTACGAGTACATGGAGGGTGGAAGCTTGGAGGATGTTATATCAGATAGGATGAGGCTGCC ATGGAGGAGGCGTATTGACATAGCAATCGATGTTGGACAAGCATTAGTATATCTTCACCACGAGTGCTCCCTTGCTATTGTGCACCGTGATGTCAAGGCT AGCAATGTCCTCCTAGATAAAGATGGCAGAGCACGAGTCACAGATTTTGGCCTCGCTAGATTTGTTGATGTTGGGGATAGCCATGTTAGTACAACGGTGG CTGGCACTATTGGGTATGTTGCGCCGGAATATGGTCAAAGTTTGCATGCGACCACCAAAGGTGATGTGTACAGTTTTGGGGTATTGGCAATGGAACTGGC AACAGGGAGGCGAGCTGTGGATGGAGGGGAAGAATGTCTATTGGAATGGGCTAGAAGAGTGATGGGAAGCTGGAGATATGGATTCAGTAGAGCTATGATA CCAGTAGTGCTTCTGGGCTCTGGGTTAGTCGAGGAAGCAGAGGAGATGTTTGAGCTACTAAAGATTGGGATAAGATGTACTGCAGAGGCACCACAGTCTA GACCCAACATGAAGGAGGTGCTAGCTATGCTAATAAAATTATCATGCAGCAGACCAGGCCGCGGGGAGATTTCATTCCTCTCTCAGGCTGATTTTCAAGA TGAAATGAGATAA
AA sequence Show only first row Show all	>Potri.012G067600.2 pacid=42783457 polypeptide=Potri.012G067600.2.p locus=Potri.012G067600 ID=Potri.012G067600.2.v4.1 annot-version=v4.1 MGRFTQLKFLVLHGNSYTGGLYSSGILKLANLVRLDLSNNNFTGPLPVEISEMHSLKFLILAYNRFNITIPQEYGNFQNLQALDLSFNNLTGQIPSSLGK LRSLLWLMLANNKLTGEIPPELGNCSSLLWLNLANNQLSGSIPHELMNVGRDPTPTFESNKQDEGIIAGSGECLTMKRWIPADYPPFSFVYTILNRKTCR SIWDRLLKGVGLFPVCAAGSTVRTFQISGYLQLSGNQLSGEVPGDIGKMQSFSMLHLGFNELNGRLPPQIGKLPLVVLNLTKNKFSGEIPNEIGNTKCLQ NLDLSYNNFSGTFPVSLNNLSEVSKFNISYNPLISGTVPTTGQMATFEKESYLGDPLLKLPNFIINSMDPPPNEYPKIKKKENKKWVAVLVLLTMTMAFL ICGLVSLFVCMLVKSPPESPRYLFEDTKYRQHDFESSSGSSSPCFSDTVKVIRLDRTAFTHADILKATDSFSESRIIGKGGFGTVYRGVLPDGREVAIKK LQREGIEGEKEFRAEMEVLTGNGFGWPHPNLVALYGWCLYGAEKILVYEYMEGGSLEDVISDRMRLPWRRRIDIAIDVGQALVYLHHECSLAIVHRDVKA SNVLLDKDGRARVTDFGLARFVDVGDSHVSTTVAGTIGYVAPEYGQSLHATTKGDVYSFGVLAMELATGRRAVDGGEECLLEWARRVMGSWRYGFSRAMI PVVLLGSGLVEEAEEMFELLKIGIRCTAEAPQSRPNMKEVLAMLIKLSCSRPGRGEISFLSQADFQDEMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74360			Leucine-rich repeat protein ki...		Potri.012G067600 [exp]	0	1
AT3G52450		PUB22	plant U-box 22 (.1)		Potri.016G069400 [exp]	2.82	0.8713
AT3G50900			unknown protein		Potri.007G022300 [exp]	4.24	0.8784
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.007G044000 [exp]	6.48	0.8639
AT1G30755			Protein of unknown function (D...		Potri.002G021400 [exp]	9.38	0.8525
AT4G27290			S-locus lectin protein kinase ...		Potri.001G414200 [exp]	9.38	0.8168
AT2G32070			Polynucleotidyl transferase, r...		Potri.006G262500 [exp]	15.58	0.8112
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Potri.001G189500 [exp]	16.79	0.8469
AT1G74360			Leucine-rich repeat protein ki...		Potri.015G061600 [exp]	18.33	0.8455
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.001G099001 [exp]	18.84	0.8507
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241800 [exp]	20.24	0.8365

Compare expression of checked genes

Potri.012G067600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.