Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18670 879 / 0 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G74330 865 / 0 Protein kinase superfamily protein (.1.2) AT5G39420 598 / 0 CDC2CAT CDC2C (.1) AT1G53050 570 / 0 Protein kinase superfamily protein (.1) AT1G09600 549 / 0 Protein kinase superfamily protein (.1) AT3G01085 545 / 0 Protein kinase superfamily protein (.1) AT1G54610 544 / 0 Protein kinase superfamily protein (.1.2.3) AT1G71530 509 / 6e-176 Protein kinase superfamily protein (.1.2) AT1G57700 512 / 1e-173 Protein kinase superfamily protein (.1) AT1G33770 506 / 2e-172 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061400 [exp] 1222 / 0 AT1G18670 846 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.017G088200 [exp] 655 / 0 AT5G39420 647 / 0.0 CDC2C (.1) Potri.008G204400 [exp] 587 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.011G119400 [exp] 585 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 582 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.005G045500 [exp] 573 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.004G226900 [exp] 570 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 567 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 548 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015727 [exp] 993 / 0 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10034726 [exp] 891 / 0 AT1G18670 782 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10021642 [exp] 835 / 0 AT1G18670 736 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10012805 [exp] 583 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 575 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025773 [exp] 574 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 568 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10004144 [exp] 568 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 565 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10028890 [exp] 540 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.012G067800.1 pacid=42782892 polypeptide=Potri.012G067800.1.p locus=Potri.012G067800 ID=Potri.012G067800.1.v4.1 annot-version=v4.1 ATGGGCTGCGTGAGCGCGAAGCAGGCGGTGTCCGTCACACCAGCGTTGGACCATTCCGGAGCGTTCAACACGGGTCGGATTCGGGTCGGCGTGGACCAGC ACCCAAGTTTCAAGAAGAATGGGGATCGCCGTCACCATCATGAGATGGTGGTGAGTTGCGGAGGGAGCGAGTTGGGTGAGTCAGGAAGAGCTCCAAGTTC AAATGGCGAGTCGTTGAGCTTTAGATTGAGGAATTTGCACAAGTACATTGAAGGTGAGCAGGTGGCAGCAGGTTGGCCGGCCTGGCTAAGTGCCGTCGCT GGCGAAGCCATTCACGGTTGGGTCCCTCTGAATGCTGATGGTTTTGAGAAATTGGACAAGATAGGACAGGGTACATATAGCAGTGTGTTCCGGGCACGTG AGACTGAAACTGGGAGGATCGTTGCTCTGAAGAAGGTTCGGTTCGACAATTTTGAGCCTGAGAGTGTCCGATTTATGGCCAGAGAGATATTGATTCTTCG TAGACTCGACCACCCCAATATCATGAAATTGGACGGATTAATCACTTCGCGATTGTCATGTAGCTTATACCTTGTCTTTGAGTACATGGAGCATGATATC ACTGGACTCCTGTCATGCCCTGATGTCAGGTTCAGTGAGTCACAGATTAAGTGCTACATGAGGCAATTATTATCAGGACTTGATCACTGTCACTCAAAGG GTGTAATGCATCGGGACATCAAAGGGTCAAATCTTCTCGTAAACAATGAAGGAATACTCAAGGTAGGAGATTTTGGATTGGCAAACTTCTGTACTTCCGG GCACAGACAACCTTTAACCAGTCGTGTAGTGACTCTGTGGTACCGTCCTCCTGAACTTTTGTTGGGTTCTACCGATTATGGAGCATCTGTGGATCTCTGG AGTGTAGGCTGTGTATTTGCAGAACTTCTTCTTGGAAAACCTATCCTTCAAGGGAGAACAGAGGTTGAACAGTTACACAAAATTTTCAAGCTCTGTGGAT CCCCGCCTGATGAATACTGGAAAAAGTCTAAACTTCCTCATGCAACTTTATTCAAACCACAACAACCTTATGACAGTTGTCTTCGTGAGACCTTTAAAGA TTTGCCAACAACTGCTGTGAACCTGATTGAAACTCTTCTCTCTGTAGAGCCTTACAACCGTGGGACTGCTTTTTCTGCTCTTGCATCTGAGTATTTCAGC ACAAAACCTTATGCGTGTGATCCATCAAGCTTGCCAAAATACCCACCTAGCAAAGAGATTGATGCAAAAAAACACGAGGAGGCAGGGAGGAAAAAGATCA GTGGGAGAGGTCGTGGCACTGAAACAAGAAAGTGTACAAGAAAACCATACGGAATCAGTAAATTGGCACCAGCAGAGGATCTAGCAGCTAGAATACAATG CGGTCAAATCAATACCAGTAATATGCGCATTCCAAAGGTAAGAGATGGCAAGTCCGGTGGAGAGGCACGGAAGCCATCACTTGATAAATTGGAAGAGATT TTCCACATAAAGAATGCATCCCAAGGAGACATTCCCTTTTCTGGCCCATTACAAGTTTCTAGTTCAAGTGGTTTTGCTTGGGCAAAAAGACGAAATGGCG ATGCATCCATAAGATCCCACAGTAGGTCTATTTCAAGAGGTCATTCTAATAATGGATTAGAACCCTCCTCTGAAGAGAAAAATAATTCTGACTCAAAACA GCATAATAATGGGGATCTCATATATGGAGTTCGTACCAATTCTAGAGGTCATAATTCATATGAGATTTCTAAGTTCGCATTGCAGAAACAATGGAGTCAG TTTGAACGTCCAGATTCTTTTGATGCTTCTGAGGAGTACCATTCTCAAGAGCTATCATTGGCACTTTATCAAAGAGAAGGAATGGAATCCAAGAGAAGTA ATTTGGTTTTTCAAGATCAAATGGACAAGGTTGACTTTTCTGGACCCCTGTTATCTCAATCACACAGAGTGGATGAACTCTTAGAAAGACACGAGCGCCA CATTCGCCAGGCAGTCCGAAAATCATGGTTTCATAGAGTTATAGGTAAGAAGCATGGAAAGTGA
AA sequence Show only first row Show all	>Potri.012G067800.1 pacid=42782892 polypeptide=Potri.012G067800.1.p locus=Potri.012G067800 ID=Potri.012G067800.1.v4.1 annot-version=v4.1 MGCVSAKQAVSVTPALDHSGAFNTGRIRVGVDQHPSFKKNGDRRHHHEMVVSCGGSELGESGRAPSSNGESLSFRLRNLHKYIEGEQVAAGWPAWLSAVA GEAIHGWVPLNADGFEKLDKIGQGTYSSVFRARETETGRIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIMKLDGLITSRLSCSLYLVFEYMEHDI TGLLSCPDVRFSESQIKCYMRQLLSGLDHCHSKGVMHRDIKGSNLLVNNEGILKVGDFGLANFCTSGHRQPLTSRVVTLWYRPPELLLGSTDYGASVDLW SVGCVFAELLLGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQQPYDSCLRETFKDLPTTAVNLIETLLSVEPYNRGTAFSALASEYFS TKPYACDPSSLPKYPPSKEIDAKKHEEAGRKKISGRGRGTETRKCTRKPYGISKLAPAEDLAARIQCGQINTSNMRIPKVRDGKSGGEARKPSLDKLEEI FHIKNASQGDIPFSGPLQVSSSSGFAWAKRRNGDASIRSHSRSISRGHSNNGLEPSSEEKNNSDSKQHNNGDLIYGVRTNSRGHNSYEISKFALQKQWSQ FERPDSFDASEEYHSQELSLALYQREGMESKRSNLVFQDQMDKVDFSGPLLSQSHRVDELLERHERHIRQAVRKSWFHRVIGKKHGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.012G067800 [exp]	0	1
AT1G77110		PIN6	PIN-FORMED 6, Auxin efflux car...		Potri.005G187500 [exp]	1.73	0.8683	PIN4,Pt-PIN6.2
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Potri.003G155700 [exp]	2.00	0.8624
AT5G48740			Leucine-rich repeat protein ki...		Potri.002G242700 [exp]	14.49	0.8447
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	14.96	0.8295
AT3G45850			P-loop containing nucleoside t...		Potri.016G082400 [exp]	16.24	0.8065
AT5G62880		ARAC10, ATRAC10...	RHO-RELATED PROTEIN FROM PLANT...		Potri.012G077800 [exp]	19.36	0.8287
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Potri.016G000300 [exp]	21.42	0.8541
AT2G41830			Uncharacterized protein (.1)		Potri.006G052100 [exp]	22.49	0.8356
AT4G02100			Heat shock protein DnaJ with t...		Potri.002G197300 [exp]	24.49	0.8132
AT3G08490			unknown protein		Potri.001G267200 [exp]	25.03	0.8249

Compare expression of checked genes

Potri.012G067800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.