Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07740 723 / 0 actin binding (.1) AT2G25050 527 / 8e-166 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT1G31810 527 / 2e-164 AFH14 Formin Homology 14 (.1) AT5G07770 507 / 5e-163 Actin-binding FH2 protein (.1.2) AT3G32400 470 / 4e-152 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G07650 465 / 6e-146 Actin-binding FH2 protein (.1) AT5G58160 473 / 1e-143 actin binding (.1) AT5G07780 446 / 2e-143 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 432 / 3e-133 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 200 / 3e-57 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061001 [exp] 1119 / 0 AT5G07740 722 / 0.0 actin binding (.1) Potri.006G185601 [exp] 538 / 5e-176 AT5G58160 603 / 0.0 actin binding (.1) Potri.006G263700 [exp] 553 / 8e-173 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.018G108000 [exp] 542 / 8e-171 AT5G58160 600 / 0.0 actin binding (.1) Potri.018G019600 [exp] 547 / 4e-170 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.003G103800 [exp] 536 / 6e-167 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.006G185501 [exp] 495 / 2e-161 AT5G58160 598 / 0.0 actin binding (.1) Potri.007G054900 [exp] 130 / 2e-30 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.010G037900 [exp] 129 / 5e-30 AT1G70140 488 / 4e-162 formin 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003482 [exp] 766 / 0 AT5G07740 714 / 0.0 actin binding (.1) Lus10015724 [exp] 749 / 0 AT5G07740 723 / 0.0 actin binding (.1) Lus10007447 [exp] 519 / 6e-162 AT5G58160 604 / 0.0 actin binding (.1) Lus10035830 [exp] 520 / 6e-161 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 520 / 2e-159 AT5G58160 608 / 0.0 actin binding (.1) Lus10003956 [exp] 513 / 5e-159 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10024450 [exp] 512 / 6e-159 AT5G58160 600 / 0.0 actin binding (.1) Lus10023804 [exp] 510 / 1e-157 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10017556 [exp] 351 / 6e-110 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 236 / 8e-71 AT5G07740 282 / 6e-88 actin binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.012G067900.12 pacid=42784383 polypeptide=Potri.012G067900.12.p locus=Potri.012G067900 ID=Potri.012G067900.12.v4.1 annot-version=v4.1 ATGGCGCTGTTCAGACGTTTCTTTTACCGGAAGCCGCCGGATCGGCTTCTTGAGATCTCCGAGAGAGTCTACGTATTTGACTGTTGCTTCTCCACGGAAG TGTTGGAAGAAGATGAGTACAAGGTTTACTTGGGTGGCATTGTAGCACAGCTACAAGACCACTTTCCTGATGCGTCCTTCATGGTTTTTAACTTTAGAGA AGGGGAGAGGCGTAGCCAAATTTCAGACATACTTTCACAATATGACATGACAGTTATGGATTACCCTCGCCAATATGAGGGCTGTCCTATGCTGCCTCTG GAGATGATCCACCACTTCCTTCGATCAAGTGAAAGCTGGCTGTCCTTGGAAGGGCAGCAGAATGTGCTGTTAATGCATTGTGAAAGAGGAGGTTGGCCTG TACTTGCTTTCATGCTTGCAGGTCTTTTGCTATACCGGAAACAATATACTGGGGAGCACAAGACTCTTGAAATGGTCTACAAGCAAGCTCCGAGGGAACT TCTCCATCTTTTGTCTCCTTTAAATCCACAGCCTTCCCAACTTAGATATCTTCAGTACATTTCTAGAAGAAATTTTGGTTCTGATTGGCCTCCATCAGAT ACTCCTTTACAGTTGGATTGTCTGATGCTAAGATCCCTTCCTTTGTTTGAAGGGGGTAAAGGTTGCCGGCCAGTTGTACGTGTTTATGGCCAGGATCCTT CAAAACCAGCCAATAGAACTTCCAAGCTTCTGTTTTCAACATCGAAGACTAAAAAACATGTTCGCCTCTACCGGCAGGAAGAGTGTATGCTAGTGAAAAT AGATATACGGTGCCGGGTTCAAGGGGATGTTGTTCTTGAGTGCATCCATTTGGATGAAGATTTGGTACGTGAGGAGATGATGTTCAGAGTGATGTTTCAC ACAGCATTTGTGCAGGCCAATATTTTGATGCTCGTCCGTGATGAGATTGACTTTCTCTGGGACGCCAAGGACCAATTTCCAAAGGACTTTAGAGCAGAGG TACTTTTTGTGGATGCTGATGCTGTGGTGCCTAATGTCACCACAGTCGAGGCAAATGAAGATGGGAACGAGACAGAAAGTGCTTCACCTGAGGAATTTTT TGAGGTGGAAGAAATTTTCAGCAATGTAGTAGACGGGCATGAAGCAAAGGGGTATGGTGCCTCTCATAAAGTCCATGACAACATGCCAGTTGATGTAGAC GGTAAAGAAGTCTGGAAGGAGGACTCAGATCTTCACTCATTTGAAGACTGTGCTTCTGATGACGGGAATCACAAACAGGAGGGGAAGCTAGATTCTAGTG TTGATGCAGTGAAGGACATTGCTGTGGATGATGTCAAGTACAAGGTAGATGAGAAGGTGGATTCTGATTTTTTAGCAGTGAAAGACATTACCGTGGATGA TGGCGAAATCAAGGCAGATTCTGTGGTTTCTGCTACTGGTACGCTGATCAGGAAACAAACAACAGAAGTGATTGGAGATGTCGACGGGGAACTTAAAAAG ATGGAAGATGAAGGTGATAGAGAAAATAGTGCTACAAAGAAGTTGGAATCCCAGGATCCACCAGTAGAGTTGAGTGCTGATGCTGGTAGACAAAAACTTG AGCAATTAATGTTACCTTCACCAAGGAGGCAGCCTACATCAAATGCAAAACCTGCTGCAGATTCAATTATAACCGAACAAAAGACTAAACATAATGAACA AGAAGGAGCTCATGGAAAACAAACAAAGCCAAATACCATTCCTCGGTGGGTTCCCCCTAATAGAGGCCCTTTTAGCAATTCCATGCACGTAGCACATCCG CCATCAAGATATAATAGTGCACCACCGGCTCTTACATTTTGTGCTTCACCGGAGGACTCTAGTGCTGGTGGCCATGTAAAGATTTCTTCTGTTGCCACTG GCCCTGGAGATATAATTTCAAATGATTTTCCTTCTCCAACTGAAGCTCCACCTTCTCTTGACCCGCAACAAATTGCCCTCCGTGGTCCCCCACCTCCACC TCTGCCATATTCCAACAAATCTTCATTTTATGATTTCCAGGCCAGTTCAGGTGGTGAAGCACCACCACTTCATTCACAGATTGCTGATGCAGTTTCCTTT CCCCCTCCGCCTCCCACATCATTTAGCAGGCAGAATATTCAGATGATTCCTCAACATTCATCTCCACCACCCCCTCCTCCTCTTCCCCAGCTGTCTAATA GGCAGACTATTGGGATGGTTTTGCCTCCACCTCCTCCACCCCCTTGGAAGTCTGGGAATACTCCAGCTGTTTTCACTACAACTTATTCTCCACCCCCTCC TCCTCCATCCCCTCTTCTCCCTTCAGGTGCCTCTACTACAAATCATGGCAGACTTGGAATTCCCAATCCACCTCCACCTCCACCTCCACCTCTTTCTCTT GCACACACGTGTAGCACTCCTTTGGCTCAATCAATGCCCACTCATGGAGTTATACCTCCACCTCCTCCTCCACCCTCGAAGCCTGCACAAAGAGCTCCAC CACCTTCGCAGCCTGCACATGGAGCTCCACCACCCCCACCTCCACCTCCTATGCGTGGTCCACCACTTCCTCCACTTGTGAGTCAGGCTCCTCCTCCACC TCCTATGCGTGGTCCACCACCACCTCCACCTCCACCTCCACCTCCTATGCGTGGTCAACCACTACCTCCACTTGTGAGTCAGGCTCCTCCTCCACCACCG CCTCCTCCAGGCCGTGGAGCCCCCCCTCCTCCCCCGCCTCCTCCAGGCCGTGGAGCCCCCCCTCCCCCGCCTCCTCCAGGCCGTGGACCACCTCCACCGC CTCCACCAGGAGCTCGTGTTCCTGGACCTCCTGCATCACCAAGACCTCCAGGCAGTGCACCCCATCCACCTCCAGCCTTAGGTGTCAAAGGAGCTGCTGA TGCAAGAGGTCTGCCTTCGGGAAGAGGGCGGGGTTTTTTACGTCCTTCAGGGATGGGGACATCTGCTACAGCACCCAGAAGATCTTCTTTAAAGCCTTTG CATTGGAGCAAGGTAACAAGAGCAATACAAGGAAGCTTATGGGAGGAGCTGCAAAGGCATGGAGAGTCCCAAATTGCCCCAGAATTTGACGTGTCAGAGC TAGAAAGCCTTTTCTCTGCAACTGTCCACAAACCTGCTGATTCGGGAGGTAAAGCTGGTGGAAGACACAAGTCTGTTGGATCAAAAACTGACAAAGTTCA CCTGATTGATCTGCGGAGGGCGAATAACACTGAAATTATGCTTACAAAAGTTAAGATGCCGCTTTCTGACATGATGGCTGCAGTTCTAGCAATGGATGAG TCAATATTAGATGTTGATCAAGTGGAAAATCTTATAAAGTTCTGTCCCACGAAAGAGGAGATGGAACTTCTCAAGGGCTATACAGGTGACAAGGAAAACC TGGGGAAGTGTGAACAGTACTTCTTGGAGCTGATGAAAGTGCCACGTGTGGAGTCCAAGTTGAGAGTGTTTTCTTTCAAGATTCAATTCGGCTCTCAGAT TTCAGAATTTAAAAAGAGCTTAAACACTGTAAACTCTGCATGTGATGAGGTCCGGAATTCCCTCAAATTGAAGGAAATTATGAAGAAAATTCTTTATTTG GGGAATGCGCTGAATCAAGGAACTGCACGGGGTTCTGCAATTGGATTCAAGTTGGACAGTCTTTTAAAACTCACTGATACGCGTGCTTCTAACAACAAGA TGACGCTCATGCATTATCTTTGCAAGGTGCTCGCTGCCAAGTCACAAGCACTTCTAGATTTTCACCGCGACCTAGTTAGCCTCGAAACTGCATCTAAGAT ACAATTGAAGTCTTTAGCAGAAGAAATGCAGGCTATAATCAAGGGGTTAGAGAAGGTTAAGAAGGAGTTGGCAGCATCAGAAAATGATGGTCCTGTGTCC GAAGTTTTTCGAAAGACACTAAAAGAATTCATTAGTGTTGCTGAGACAGAGGTGGCATCCGTGACAAGTTTCTATGCTGTGGTGGGTAGAAATGCGGATG CACTTGCACTGTACTTCGGTGAGGATCCTGCCCGTTGCCCATTTGAGCAAGTTACAGCTACTCTCTTAAATTTTGTGAGATTGTTTCGTAAAGCGCATGA GGAAAATTTGAAACAGGCTGAATTGGAGAGGAAGAAAGCTGAGAAGGAGGCTGAAATGGAGAAGGCAAGGGGTATAAATCTTACAAAGAAGAACATGGAA TAA
AA sequence Show only first row Show all	>Potri.012G067900.12 pacid=42784383 polypeptide=Potri.012G067900.12.p locus=Potri.012G067900 ID=Potri.012G067900.12.v4.1 annot-version=v4.1 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTEVLEEDEYKVYLGGIVAQLQDHFPDASFMVFNFREGERRSQISDILSQYDMTVMDYPRQYEGCPMLPL EMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGEHKTLEMVYKQAPRELLHLLSPLNPQPSQLRYLQYISRRNFGSDWPPSD TPLQLDCLMLRSLPLFEGGKGCRPVVRVYGQDPSKPANRTSKLLFSTSKTKKHVRLYRQEECMLVKIDIRCRVQGDVVLECIHLDEDLVREEMMFRVMFH TAFVQANILMLVRDEIDFLWDAKDQFPKDFRAEVLFVDADAVVPNVTTVEANEDGNETESASPEEFFEVEEIFSNVVDGHEAKGYGASHKVHDNMPVDVD GKEVWKEDSDLHSFEDCASDDGNHKQEGKLDSSVDAVKDIAVDDVKYKVDEKVDSDFLAVKDITVDDGEIKADSVVSATGTLIRKQTTEVIGDVDGELKK MEDEGDRENSATKKLESQDPPVELSADAGRQKLEQLMLPSPRRQPTSNAKPAADSIITEQKTKHNEQEGAHGKQTKPNTIPRWVPPNRGPFSNSMHVAHP PSRYNSAPPALTFCASPEDSSAGGHVKISSVATGPGDIISNDFPSPTEAPPSLDPQQIALRGPPPPPLPYSNKSSFYDFQASSGGEAPPLHSQIADAVSF PPPPPTSFSRQNIQMIPQHSSPPPPPPLPQLSNRQTIGMVLPPPPPPPWKSGNTPAVFTTTYSPPPPPPSPLLPSGASTTNHGRLGIPNPPPPPPPPLSL AHTCSTPLAQSMPTHGVIPPPPPPPSKPAQRAPPPSQPAHGAPPPPPPPPMRGPPLPPLVSQAPPPPPMRGPPPPPPPPPPPMRGQPLPPLVSQAPPPPP PPPGRGAPPPPPPPPGRGAPPPPPPPGRGPPPPPPPGARVPGPPASPRPPGSAPHPPPALGVKGAADARGLPSGRGRGFLRPSGMGTSATAPRRSSLKPL HWSKVTRAIQGSLWEELQRHGESQIAPEFDVSELESLFSATVHKPADSGGKAGGRHKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLSDMMAAVLAMDE SILDVDQVENLIKFCPTKEEMELLKGYTGDKENLGKCEQYFLELMKVPRVESKLRVFSFKIQFGSQISEFKKSLNTVNSACDEVRNSLKLKEIMKKILYL GNALNQGTARGSAIGFKLDSLLKLTDTRASNNKMTLMHYLCKVLAAKSQALLDFHRDLVSLETASKIQLKSLAEEMQAIIKGLEKVKKELAASENDGPVS EVFRKTLKEFISVAETEVASVTSFYAVVGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENLKQAELERKKAEKEAEMEKARGINLTKKNME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07740			actin binding (.1)		Potri.012G067900 [exp]	0	1
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	1.41	0.8311
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	5.91	0.7735	CHR919
AT4G02480			AAA-type ATPase family protein...		Potri.015G094100 [exp]	6.00	0.7740
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	6.24	0.7817
AT1G20760			Calcium-binding EF hand family...		Potri.007G063200 [exp]	6.48	0.7965
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	6.92	0.7768
AT5G19420			Regulator of chromosome conden...		Potri.001G026900 [exp]	7.74	0.7645
AT2G47830			Cation efflux family protein (...		Potri.002G209023 [exp]	8.06	0.7532
AT2G21630			Sec23/Sec24 protein transport ...		Potri.002G238500 [exp]	9.21	0.7766
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.006G000700 [exp]	14.42	0.7320

Compare expression of checked genes

Potri.012G067900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.