Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61340 154 / 4e-45 unknown protein AT1G26650 59 / 5e-10 unknown protein AT1G69430 57 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060900 [exp] 337 / 2e-116 AT5G61340 164 / 5e-48 unknown protein Potri.004G102800 [exp] 100 / 6e-25 AT5G61340 73 / 2e-14 unknown protein Potri.010G163400 [exp] 65 / 8e-12 AT1G26650 453 / 1e-160 unknown protein Potri.008G091500 [exp] 57 / 2e-09 AT1G26650 401 / 3e-140 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021641 [exp] 213 / 9e-68 AT5G61340 191 / 5e-58 unknown protein Lus10034727 [exp] 204 / 4e-64 AT5G61340 193 / 4e-59 unknown protein Lus10015723 [exp] 114 / 3e-30 AT5G61340 135 / 2e-37 unknown protein Lus10003483 [exp] 111 / 4e-29 AT5G61340 153 / 2e-44 unknown protein Lus10037135 [exp] 57 / 3e-09 AT1G69430 431 / 8e-152 unknown protein Lus10036796 [exp] 56 / 9e-09 AT1G69430 434 / 4e-153 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G068000.1 pacid=42783795 polypeptide=Potri.012G068000.1.p locus=Potri.012G068000 ID=Potri.012G068000.1.v4.1 annot-version=v4.1 ATGCCTTTTTCACTCCCATCAATGGATCAAGATAGTATTCCGACAGGCAGCAAGATTATGCGAAAATCTATCTATACTTACCTTCAAAACTATCACTACT TCACCTTAACGTCAGCCCTCCTTGCCTTCCCTTTCTCGGCCTCAACTCTCCTCGCACATCTGCTTCTTGTTTCCCCCTCGTCGTCTCTCCTTCCAATCAT ATACAACAGGTTGAACAGTCTGTTCCACGCTGCAGGATTCCCTCACTCCTCGGAGTTGATCGCCCTTGTCAGTCTCAAGCTCTCTCAAACAATCTCCTTT TTCATTCTCACGCTTCCCCTGAACTCTACTCTGTTCCTCATCGCAAAAGCATCTGTTATTCAAGTCGTCAATCGCCACAAACCACCTTCTTTCTATTGTA TTTTCTCCATTTTCAACCCTCTCCTCCTCACCTATGCAAGCAATTCATTATTGATCCTCTCAGCCAATGCAACAGCTTTTTGTCTCCTGTCCATTGCTTT CAATCTTTTTCATGATGATATTGGATTTGGCTCTCTCTTCCTCTCAGCTGCTGGAGCTGTTGTTTACTCCATCATCCTTGCAAATGTGATCATAATATGC AACTTGGCGTTGGTCATATCAGGAATGGAAAGATTCGGCGGATATCTGGCCATCCTAAAAGCTTGTGTTATGATTAGGGGAAGGGCTTCAACGGCGCTAT CACCTACACTTGCTGTCAATATAGCCTTGGCAGGAGTTGAAGCATTATTCCAATACCGAATTGTGAGAGCTCTTTGCTGA
AA sequence Show only first row Show all	>Potri.012G068000.1 pacid=42783795 polypeptide=Potri.012G068000.1.p locus=Potri.012G068000 ID=Potri.012G068000.1.v4.1 annot-version=v4.1 MPFSLPSMDQDSIPTGSKIMRKSIYTYLQNYHYFTLTSALLAFPFSASTLLAHLLLVSPSSSLLPIIYNRLNSLFHAAGFPHSSELIALVSLKLSQTISF FILTLPLNSTLFLIAKASVIQVVNRHKPPSFYCIFSIFNPLLLTYASNSLLILSANATAFCLLSIAFNLFHDDIGFGSLFLSAAGAVVYSIILANVIIIC NLALVISGMERFGGYLAILKACVMIRGRASTALSPTLAVNIALAGVEALFQYRIVRALC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61340			unknown protein		Potri.012G068000 [exp]	0	1
AT2G24400			SAUR-like auxin-responsive pro...		Potri.010G253800 [exp]	15.00	0.7709
AT5G60580			RING/U-box superfamily protein...		Potri.016G022900 [exp]	19.89	0.7712
AT5G19610		GNL2	GNOM-like 2 (.1)		Potri.018G075300 [exp]	22.53	0.8321
AT3G20190			Leucine-rich repeat protein ki...		Potri.007G002000 [exp]	27.27	0.8137
AT5G56350			Pyruvate kinase family protein...		Potri.003G223100 [exp]	28.98	0.7007
					Potri.008G057232 [exp]	30.98	0.7153
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.004G143200 [exp]	43.78	0.8002
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.011G069600 [exp]	50.40	0.7973
					Potri.005G218650 [exp]	53.66	0.7930
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	54.77	0.7814

Compare expression of checked genes

Potri.012G068000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.