Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18660 679 / 0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT1G75460 84 / 5e-18 ATP-dependent protease La (LON) domain protein (.1) AT1G19740 82 / 2e-17 ATP-dependent protease La (LON) domain protein (.1) AT3G27330 76 / 3e-14 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G26350 54 / 1e-07 PEX10, ATPEX10 peroxin 10 (.1) AT2G42030 54 / 1e-07 RING/U-box superfamily protein (.1) AT1G74990 51 / 1e-07 RING/U-box superfamily protein (.1) AT3G07200 51 / 3e-07 RING/U-box superfamily protein (.1.2) AT2G32950 53 / 5e-07 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT3G24800 52 / 5e-07 PRT1 proteolysis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232800 [exp] 80 / 1e-16 AT1G75460 366 / 2e-128 ATP-dependent protease La (LON) domain protein (.1) Potri.002G029900 [exp] 80 / 2e-16 AT1G75460 373 / 3e-131 ATP-dependent protease La (LON) domain protein (.1) Potri.001G336832 [exp] 79 / 1e-15 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G178700 [exp] 60 / 2e-09 AT3G24800 269 / 9e-86 proteolysis 1 (.1) Potri.014G191400 [exp] 53 / 7e-08 AT5G48655 158 / 8e-49 RING/U-box superfamily protein (.1.2.3) Potri.002G245500 [exp] 52 / 1e-07 AT5G48655 154 / 2e-47 RING/U-box superfamily protein (.1.2.3) Potri.002G241900 [exp] 53 / 3e-07 AT3G24800 314 / 2e-103 proteolysis 1 (.1) Potri.001G049300 [exp] 52 / 3e-07 AT3G24800 199 / 7e-61 proteolysis 1 (.1) Potri.002G259000 [exp] 53 / 4e-07 AT1G04020 472 / 3e-156 breast cancer associated RING 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015722 [exp] 776 / 0 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 679 / 0 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10022324 [exp] 79 / 2e-15 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10032119 [exp] 78 / 2e-15 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10024294 [exp] 61 / 1e-10 AT1G75460 313 / 2e-109 ATP-dependent protease La (LON) domain protein (.1) Lus10025930 [exp] 53 / 3e-07 AT3G24800 287 / 2e-93 proteolysis 1 (.1) Lus10004162 [exp] 52 / 8e-07 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10021063 [exp] 52 / 9e-07 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10038169 [exp] 51 / 2e-06 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10032234 [exp] 50 / 2e-06 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0178 [poplar] [flax] PUA PF02190 [poplar] [flax] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G068100.1 pacid=42783080 polypeptide=Potri.012G068100.1.p locus=Potri.012G068100 ID=Potri.012G068100.1.v4.1 annot-version=v4.1 ATGTCAGGTGAAGCGGCGTCGTCGTCTTCTGGAGTGGTTTTACAAGGACTCGACGATGTTGAGGAATTCATTTGGGCAAATGAAGGAGAGGGTTCGTTGC CATGGGACCGATTCAGTCATGTTTTTGATCTTGTGCAAAATGGAAACAAGGCATTCCGGGAGAATCATTTTGAGGAGGCAATCAATTATTACTCAAGAGC CAATAACATTAAACCCGGTGATCCTATTATTCTTGGCAACCGTAGTGCTGCTTATAGCAGGGTCAGCCATTTACTGAAACAGAGACCTGCATCCACTTCT GAGGACACACCATTAAATGGGCTGGATCCTACTATACATGCTGAACTTGCATTGAAGGATGCCGAGAAGGTAATAAACCTCAGAAACAATTCAGTGAATC CATACATCTTAAAGGCCAATGCTCTTATATTGCTGGAAAAGTATGAGCTGGCTCAGGATGTTGTTCTTTCAGGTCTTCAGGTTGATCCTTTCAGCAATCC TCTTCGTGTTTCTTTACGGAATTTGGAGAGAATGCTGGGCAGTATGATGAGTAAAAGTCTTGGGAAACCAGAACGTAGTGATGAATTTGATTGCACTCTC TGCCTGAAGTTACTATTTGAACCTATTACGACTCCCTGTGGGCATTCCTTTTGCCGCTCATGTCTTTTCCAGTCAATGGATCGTGGTAACAAATGCCCAT TGTGTCGAACAGTTCTCTTTATCAGTCCTAGAACATGTTCAATCAGTGTGACCCTAAACAACATTATACAGAAGAACTTCCCAGAGGAATACGCTGAAAG GAAGTCCGAGCATGACTGTTTGACAAACTTTGGTGTTGATTTGATCCCTCTTTTTGTCATGGATGCTGTTATCCCGTGTCAGAAGTTTCCACTCCACATA TTTGAACCACGATACAGACTGATGGTCAGGAGGATCATGGAAGGAAATCATCGGATGGGAATGGTTATCATCGATTCTGCTTCAGGCTCGATAGCTGATT TGGCTTGCGAGGTGGAGATTACTGAGTGTGAACCACTTCCAGATGGGCGCTTCTATCTAGAGGTTGAAAGTCGCCGAAGATTTAGAATCCTTCAATCTTG GGATCAAGATGGGTATCGTGTTGCAGAGATAGAATGGGTACAGGATAATTCACCTGAAGGGCTGGAACAGAGAACCGAAATGCAGGAACTTACAAATAGC GCAGCAGAATATGCTCAGTCATGGTTAAGGAGGGCAAAGGAAGCTGCAAGACAAGATCGAAGAAGACTTGAGAAATTTCTTAATGTGGAAGCAATGATGC CCATGCCATTGGATCCTGAACGCTTCAGTTTCTGGCTTGCTACTTTAACAGATAGGAGACCTAGTGAAAGATTGGAGCTCCTTCGTACAAGGGATACAAC AAAGAGGATAAGACAAGGACTGGACTATCTTGGAAAAGCAGAACAAGGCTGCAGGATGCAGTGA
AA sequence Show only first row Show all	>Potri.012G068100.1 pacid=42783080 polypeptide=Potri.012G068100.1.p locus=Potri.012G068100 ID=Potri.012G068100.1.v4.1 annot-version=v4.1 MSGEAASSSSGVVLQGLDDVEEFIWANEGEGSLPWDRFSHVFDLVQNGNKAFRENHFEEAINYYSRANNIKPGDPIILGNRSAAYSRVSHLLKQRPASTS EDTPLNGLDPTIHAELALKDAEKVINLRNNSVNPYILKANALILLEKYELAQDVVLSGLQVDPFSNPLRVSLRNLERMLGSMMSKSLGKPERSDEFDCTL CLKLLFEPITTPCGHSFCRSCLFQSMDRGNKCPLCRTVLFISPRTCSISVTLNNIIQKNFPEEYAERKSEHDCLTNFGVDLIPLFVMDAVIPCQKFPLHI FEPRYRLMVRRIMEGNHRMGMVIIDSASGSIADLACEVEITECEPLPDGRFYLEVESRRRFRILQSWDQDGYRVAEIEWVQDNSPEGLEQRTEMQELTNS AAEYAQSWLRRAKEAARQDRRRLEKFLNVEAMMPMPLDPERFSFWLATLTDRRPSERLELLRTRDTTKRIRQGLDYLGKAEQGCRMQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18660			zinc finger (C3HC4-type RING f...		Potri.012G068100 [exp]	0	1
AT2G46320			Mitochondrial substrate carrie...		Potri.002G167700 [exp]	4.24	0.9335
					Potri.005G182750 [exp]	9.59	0.9283
AT4G03260			Outer arm dynein light chain 1...		Potri.019G119300 [exp]	11.48	0.8988
AT5G54290		CcdA	cytochrome c biogenesis protei...		Potri.001G406700 [exp]	11.66	0.9253
AT1G70900			unknown protein		Potri.008G130700 [exp]	12.48	0.8967
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.001G380500 [exp]	16.61	0.9239
AT1G06210			ENTH/VHS/GAT family protein (....		Potri.005G225000 [exp]	18.76	0.8868
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G011400 [exp]	18.76	0.9089
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Potri.006G053000 [exp]	18.97	0.9257
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007400 [exp]	19.89	0.9111

Compare expression of checked genes

Potri.012G068100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.