Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61370 579 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G60960 168 / 3e-46 PNM1 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 130 / 2e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 128 / 2e-31 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 127 / 4e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 120 / 3e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 119 / 5e-29 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 117 / 3e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62470 112 / 2e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04130 111 / 4e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G133400 [exp] 154 / 4e-41 AT5G60960 637 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 138 / 2e-35 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G149800 [exp] 135 / 5e-34 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G070200 [exp] 131 / 3e-33 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G021200 [exp] 132 / 5e-33 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.018G038300 [exp] 132 / 5e-33 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 131 / 1e-32 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 131 / 2e-32 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 129 / 7e-32 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000207 [exp] 629 / 0 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021630 [exp] 629 / 0 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000564 [exp] 622 / 0 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034673 [exp] 156 / 1e-41 AT5G60960 639 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017862 [exp] 154 / 5e-41 AT5G60960 645 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 141 / 3e-36 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030887 [exp] 136 / 1e-34 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 136 / 1e-34 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 134 / 3e-33 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 134 / 3e-33 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.012G068400.1 pacid=42783108 polypeptide=Potri.012G068400.1.p locus=Potri.012G068400 ID=Potri.012G068400.1.v4.1 annot-version=v4.1 ATGCATTGCTTCTGGAAATCAAGATGGGCTGGCTTTTTGTTCCAAAACATTAAAACTAACAAATCTAAGCCTCCTTTATATTCCACAAAGCAGCAGCATA ACCAACTGCCACTTGAGCTGCAAGAAGCGTGTAAAGTTATTTCGAGCTGGATTGGTGGTTTGGATGACTTAGAGTTGAGTTTAAATCAATTTAAAGGTCA GTTAACATATCCTCTTGTTACACAAATTATAAATTCCTGCAAACATGAGGCTCCTTCCAGAAGAATCTTGAGATTTTTTCTGTGGTCCAATAAAGTTTTG GATTCTGAAAAACTGAAAGATGATGATTTCAATCATGTCATTCGAGTTTTGGCCGAGAAGAAGGATCACACAGGAATGCGTATTTTGATTTCGGATTTAA GGAAGGAAGGCCGCGTAATGGACCCACAAACTTTTGCTCTTGTAGCTGAGACTTTGGTTAAACTGGGGAGAGAAGATGAGGCGTTGGGTATATTCAAGAA CTTGGAAAAGTTCAAGTGCCCACAAGATGGTTTTGCTGTTACTGCCATTATAAGCGCTCTTTGTGCGAAAGGGCATGCTAAGAAAGCACAAGGAGTGTTT TCGCACCATAAGAATAATAAGATATCCGGTTTAGAGCCTTGTGTTGTTTATAGGTGTCTTTTGTATGGGTGGTCCGTGCAGGAGAACGTGAAGGAAGCTC GAAAGATTATCCAAGAGATGAAGGGAGATGGGTTAATCCCAGATTTATTTTGTTATAATACTTTTCTCAAGTGCCTTTGCGAAAGAAATCTTAAACGCAA TCCATCTGGACTTGTCCCTGAAGCTCTGAATGTGATGATGGAAATGAGATCATATAGGATTGAGCCAAACTCAATTAGTTACAATACATTGCTTTCTTCT CTTGGGAGAGCAAGAAGAGTTAAGGAATCGTATAGGATGCTTGAGACAATGAAAACAACAGGTTGTGCTCCTGATTGGGTTAGTTATTTTCTTGTTGCAA AAGTGATGTATCTGACTGGTAGATTCGGTAAAGGAAATGAAATAGTTGATGAGATGATTGGACAGGGGCTGCTGCCAGATCGTAAGTTTTACTATAATTT GATTGGTGTTCTCTGTGGAGTTGAGAGGGTGAGTTATGCCCTTGAGTTATTTGAACGAATGAAGACAAGCTCGTTGGGTGGTTATGGGCCTGTATATGAT ATTTTGATACCAAAGCTTTGTAAAGGTGGGGATTTTGAAAGGGGTAGAGAGCTATGGGAGGAGGCCACTGCTATGGGTGTCTCTTTTAGCTGCTCCAGTG ATGTGTTGGATCCCTCTATCACTGAGGTTTTCAAGCCCAGAAGGAAGGTGGAAGAAGATGTCAAGCTTGAGAAATTCAGCAGAAACGAGATCCCCAGACT CGAGCCCAAGTCAAGACGAGAAAGGGGGAAGGTGAAGAAGAAAATCAGGGGGAAATGA
AA sequence Show only first row Show all	>Potri.012G068400.1 pacid=42783108 polypeptide=Potri.012G068400.1.p locus=Potri.012G068400 ID=Potri.012G068400.1.v4.1 annot-version=v4.1 MHCFWKSRWAGFLFQNIKTNKSKPPLYSTKQQHNQLPLELQEACKVISSWIGGLDDLELSLNQFKGQLTYPLVTQIINSCKHEAPSRRILRFFLWSNKVL DSEKLKDDDFNHVIRVLAEKKDHTGMRILISDLRKEGRVMDPQTFALVAETLVKLGREDEALGIFKNLEKFKCPQDGFAVTAIISALCAKGHAKKAQGVF SHHKNNKISGLEPCVVYRCLLYGWSVQENVKEARKIIQEMKGDGLIPDLFCYNTFLKCLCERNLKRNPSGLVPEALNVMMEMRSYRIEPNSISYNTLLSS LGRARRVKESYRMLETMKTTGCAPDWVSYFLVAKVMYLTGRFGKGNEIVDEMIGQGLLPDRKFYYNLIGVLCGVERVSYALELFERMKTSSLGGYGPVYD ILIPKLCKGGDFERGRELWEEATAMGVSFSCSSDVLDPSITEVFKPRRKVEEDVKLEKFSRNEIPRLEPKSRRERGKVKKKIRGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	0	1
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000350 [exp]	1.41	0.9711
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.009G109001 [exp]	2.82	0.9592
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	3.16	0.9581
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	3.87	0.9621
AT2G33680			Tetratricopeptide repeat (TPR)...		Potri.006G053100 [exp]	4.00	0.9481
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.012G018800 [exp]	4.24	0.9530
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	4.58	0.9484
AT3G47530			Pentatricopeptide repeat (PPR)...		Potri.003G074500 [exp]	4.79	0.9273
AT2G15530			RING/U-box superfamily protein...		Potri.011G103301 [exp]	6.63	0.9153
AT4G19110			Protein kinase superfamily pro...		Potri.001G035400 [exp]	6.70	0.9331

Compare expression of checked genes

Potri.012G068400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.