Plant FIBer expression Database

Potri.012G068500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G18730 184 / 4e-60 PnsB4, NDF6 Photosynthetic NDH subcomplex B 4, NDH dependent flow 6 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021662
[exp]
167 / 7e-53 AT1G18730 189 / 8e-62 Photosynthetic NDH subcomplex B 4, NDH dependent flow 6 (.1.2.3.4)
Lus10001645
[exp]
156 / 4e-49 AT1G18730 182 / 3e-59 Photosynthetic NDH subcomplex B 4, NDH dependent flow 6 (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.012G068500.1 pacid=42783625 polypeptide=Potri.012G068500.1.p locus=Potri.012G068500 ID=Potri.012G068500.1.v4.1 annot-version=v4.1
ATGGCCAAAGCTATAACGGGCTTTACCATCACAAAACCGCACATGCTTAGCTCTCTGCAGAAAACAAAATTGGACCTCAAACCATGTTCAGGAGGGCTTT
GGCAATGTTCAAGCGACGGGCTTCTTAGTGGGTGGCTGCAGCATAAACGCAGCAATAAGAAAAGAGCTTCCTTGAGTAAAGTGAATGCCTTCCCAGATTG
GCCTCTTATGGCAGTTATGGTGGAGCATATAGAAGGTCAAAGAGACCTTATAACTCACAAATCTATATGGCATCTCAGTGATCGAGCCATAAAAAACGTC
TATGTATTTTACCTTATGTTCACTTGCTGGGGATGTTTATTCTTCGGTTCAATGAAAGACCCATATTATGACTCAGAGGCGTATAGAAAAGATGGAGGGG
ATGGCAGTGGACATTGGGTATATGACAAGCAAGACGATATTGAAGAATCTGCAAGAGCAGAGCTGTGGCGCGAGGAGTTGATTGAGGAGATTGAGCAGAA
GGTTGGAGGTCTGCGGGAACTGGAAGAAGCTGGCCGAAAGTAG
AA sequence
>Potri.012G068500.1 pacid=42783625 polypeptide=Potri.012G068500.1.p locus=Potri.012G068500 ID=Potri.012G068500.1.v4.1 annot-version=v4.1
MAKAITGFTITKPHMLSSLQKTKLDLKPCSGGLWQCSSDGLLSGWLQHKRSNKKRASLSKVNAFPDWPLMAVMVEHIEGQRDLITHKSIWHLSDRAIKNV
YVFYLMFTCWGCLFFGSMKDPYYDSEAYRKDGGDGSGHWVYDKQDDIEESARAELWREELIEEIEQKVGGLRELEEAGRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G18730 PnsB4, NDF6 Photosynthetic NDH subcomplex... Potri.012G068500
[exp]
0 1
AT1G09340 CSP41B, CRB, HI... heteroglycan-interacting prote... Potri.013G006100
[exp]
1.00 0.9854
AT5G66190 ATLFNR1 ferredoxin-NADP\(+\)-oxidoredu... Potri.007G057200
[exp]
2.44 0.9818
AT3G44890 RP19, RPL9 ribosomal protein L9 (.1) Potri.004G217000
[exp]
3.46 0.9778 Pt-RPL9.3
AT3G26070 Plastid-lipid associated prote... Potri.001G209600
[exp]
4.58 0.9798
AT5G07020 proline-rich family protein (.... Potri.003G192800
[exp]
6.32 0.9797
AT1G03130 PSAD-2 photosystem I subunit D-2 (.1) Potri.010G089400
[exp]
7.41 0.9787 PSAD1.1
AT1G43670 FINS1, AtcFBP FRUCTOSE INSENSITIVE 1, Arabid... Potri.002G069000
[exp]
7.48 0.9645
AT3G51510 unknown protein Potri.001G455900
[exp]
7.48 0.9716
AT3G10060 FKBP-like peptidyl-prolyl cis-... Potri.016G096600
[exp]
8.12 0.9745
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.005G186800
[exp]
8.36 0.9773 PtrTrxm9

Potri.012G068500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.