Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66680 55 / 3e-10 AR401 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062400 [exp] 92 / 9e-24 AT1G66680 414 / 4e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033577 [exp] 72 / 2e-16 AT1G66680 385 / 3e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017619 [exp] 71 / 5e-16 AT1G66680 471 / 1e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G068550.1 pacid=42782497 polypeptide=Potri.012G068550.1.p locus=Potri.012G068550 ID=Potri.012G068550.1.v4.1 annot-version=v4.1 ATGACTGGAATTAGGTTACAACAAGAAGAATCAGCTGACCTTCACCTGACCCCAAACAGAGTTGCTGGTGCCGGCGGCGATCTGGTGTCGGACGACGAGA GGTCTGTGGCAGCGGACTCTTGGTCAATTAAGAGTGATTATGGAAGTATTCTCGATGACGATCAGCGCCATGCTGATGCCGCCGAGGCTCTCTCCGCCGC AGCAAACTGTCGTGCTGCTTCTGATTGCAGTTCGGACAGGATGAACTGGACGCTGAAGGTGTGGCTTCCATGCTAG
AA sequence Show only first row Show all	>Potri.012G068550.1 pacid=42782497 polypeptide=Potri.012G068550.1.p locus=Potri.012G068550 ID=Potri.012G068550.1.v4.1 annot-version=v4.1 MTGIRLQQEESADLHLTPNRVAGAGGDLVSDDERSVAADSWSIKSDYGSILDDDQRHADAAEALSAAANCRAASDCSSDRMNWTLKVWLPC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.012G068550 [exp]	0	1
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Potri.001G448800 [exp]	3.00	0.9331
AT5G19580			glyoxal oxidase-related protei...		Potri.018G084200 [exp]	5.29	0.8813
AT1G71840			transducin family protein / WD...		Potri.013G116900 [exp]	5.65	0.9118
					Potri.007G010000 [exp]	6.92	0.9169
AT5G44010			unknown protein		Potri.014G192200 [exp]	9.16	0.9017
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.001G001250 [exp]	11.13	0.8620
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121725 [exp]	13.41	0.8928
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.006G147800 [exp]	17.43	0.8378
AT5G40270			HD domain-containing metal-dep...		Potri.009G147800 [exp]	19.79	0.9008
AT4G18465			RNA helicase family protein (....		Potri.004G052700 [exp]	22.00	0.8718

Compare expression of checked genes

Potri.012G068550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.