Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74460 548 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 313 / 4e-105 SGNH hydrolase-type esterase superfamily protein (.1) AT2G23540 256 / 2e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 253 / 3e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 246 / 1e-78 GLIP7 GDSL-motif lipase 7 (.1) AT5G08460 243 / 2e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 236 / 1e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 234 / 6e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 232 / 5e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29660 222 / 2e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130100 [exp] 323 / 5e-109 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 310 / 1e-103 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G104600 [exp] 259 / 9e-84 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 239 / 7e-76 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 238 / 3e-75 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 235 / 2e-74 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G089700 [exp] 232 / 4e-73 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024700 [exp] 227 / 2e-71 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 226 / 6e-71 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019095 [exp] 556 / 0 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034459 [exp] 555 / 0 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10001643 [exp] 548 / 0 AT1G74460 530 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021664 [exp] 547 / 0 AT1G74460 526 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 303 / 5e-101 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10018641 [exp] 294 / 5e-97 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10005236 [exp] 265 / 1e-85 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 263 / 8e-85 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 259 / 3e-83 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 256 / 2e-82 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.012G068700.2 pacid=42782968 polypeptide=Potri.012G068700.2.p locus=Potri.012G068700 ID=Potri.012G068700.2.v4.1 annot-version=v4.1 ATGAAGTTCGAGGTTGCCTTAGCGATATGGGTGGTGGTGGCTGTCCTCGGAGTTACGATTGATGGAGGTGAATGCAAGATTGTGCAGTTCATTTTCGGAG ATTCACTCTCGGATGTCGGCAACAACATGTACCTGAGTAGGAGTCTTGCTCAGGCGAGCTTGCCATGGTATGGTATAGATTTTGGCAATGGACTGCCTAA CGGCAGGTTCACCAATGGGCGGACGGTTGCTGATATAATAGGTGACAATACTGGGCTACCGAGACCACCTGCTTTTCTAAGCCCATCTTTAACCGAAAAT TTGATCCTGGAAAATGGTGTAAACTATGCATCTGGAGGTGGTGGCATTTTGAATGAAACTGGTGGCTACTTTATTCAGAGGCTTTCTCTCAATAAGCAAA TTGAGTTATTTCAAGGAACGCAGCAGATGATAATAAGCAAAATTGGGAAAGAAAAATCAGACGAGTTTTTCAAAGAATCCCAATATGTGGTTGCATTAGG AAGCAATGACTTCATCAACAATTATTTGATGCCAGTTTACAGCGATTCATGGAAGTACAATGATCAGTCTTTCATTGATTATTTAATGGAAACTCTTGAA GGGCAGCTAAGAAAATTGCATAGCTTCGGAGCACGGAAGCTGATGGTTTTCGGGCTGGGACCAATGGGCTGCATCCCTCTCCAAAGGGTCCTGAGCACAA CCGGAAAATGTCAAGAGAAAACAAACAAACTAGCTATTGCTTTCAATAGAGCTTCAAGCAAGTTATTAGATAATCTGTCCACCAAACTTGTAAACGCTAG CTTCAAATTTGGAGAAGCTTATGATGTTGTTAACGATGTCATCAGCAATCCAACCAAATACGGATTTGACAACGCGGACTCGCCATGCTGCTCCTTTGGG CAAATACGACCTGCTCTTACATGTCTTCCGGCATCAACGCTGTGCGAGGATAGAAGCAAGTACGTGTTTTGGGACGAATACCATCCATCAGACAGCGCAA ATGAGTTGATTGCAAATGAACTTATCAAGAAATTCGGATTTACTCGTGTCGACGGCACGAATGCTCCACCACCCTCAGCACCATCGCCTGTTACTGCCCC GTCACCTGTTATTGCCCCGTCACCTGTGGGATAA
AA sequence Show only first row Show all	>Potri.012G068700.2 pacid=42782968 polypeptide=Potri.012G068700.2.p locus=Potri.012G068700 ID=Potri.012G068700.2.v4.1 annot-version=v4.1 MKFEVALAIWVVVAVLGVTIDGGECKIVQFIFGDSLSDVGNNMYLSRSLAQASLPWYGIDFGNGLPNGRFTNGRTVADIIGDNTGLPRPPAFLSPSLTEN LILENGVNYASGGGGILNETGGYFIQRLSLNKQIELFQGTQQMIISKIGKEKSDEFFKESQYVVALGSNDFINNYLMPVYSDSWKYNDQSFIDYLMETLE GQLRKLHSFGARKLMVFGLGPMGCIPLQRVLSTTGKCQEKTNKLAIAFNRASSKLLDNLSTKLVNASFKFGEAYDVVNDVISNPTKYGFDNADSPCCSFG QIRPALTCLPASTLCEDRSKYVFWDEYHPSDSANELIANELIKKFGFTRVDGTNAPPPSAPSPVTAPSPVIAPSPVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Potri.012G068700 [exp]	0	1
AT1G68850			Peroxidase superfamily protein...		Potri.008G110600 [exp]	1.00	0.9921
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.013G048200 [exp]	2.00	0.9894
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Potri.014G080200 [exp]	2.00	0.9870
AT2G48130			Bifunctional inhibitor/lipid-t...		Potri.005G211900 [exp]	2.23	0.9861
AT5G22810			GDSL-like Lipase/Acylhydrolase...		Potri.009G151000 [exp]	2.44	0.9860
AT5G06090		ATGPAT7, GPAT7	glycerol-3-phosphate acyltrans...		Potri.008G058200 [exp]	2.44	0.9885
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.012G056300 [exp]	4.58	0.9808
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.018G070900 [exp]	6.70	0.9714
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041500 [exp]	6.92	0.9720
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.015G046800 [exp]	7.74	0.9685

Compare expression of checked genes

Potri.012G068700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.