Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74470 775 / 0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157700 [exp] 495 / 2e-173 AT1G74470 517 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Potri.004G195800 [exp] 491 / 3e-172 AT1G74470 521 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021665 [exp] 791 / 0 AT1G74470 784 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10001642 [exp] 788 / 0 AT1G74470 782 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10008405 [exp] 518 / 0 AT1G74470 536 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10026772 [exp] 123 / 1e-33 AT1G74470 126 / 2e-35 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01134 [poplar] [flax] GIDA Glucose inhibited division protein A
Representative CDS sequence Show only first row Show all	>Potri.012G068801.1 pacid=42782692 polypeptide=Potri.012G068801.1.p locus=Potri.012G068801 ID=Potri.012G068801.1.v4.1 annot-version=v4.1 ATGGCTTCTTCCATTGTCTTCAAATCCTTCACCGGACTCCGGCACTCCTCCCAGGAACATCCCAAAGTACTCCATTCCCACACAAACCCCATATCCTCTT TCTCATACCGCCGCTTTCGAATCACAGCCAGCAAGTCTAGTCCGAAGCTCCAAAACCGCAACCTCCGAGTAGCCGTCATCGGCGGCGGTCCTGCCGGTGG TGCCGCTGCAGAAACATTAGCCAAAGGAGGCATTGAAACATACCTCATCGAACGAAAGCTGGACAACTGCAAGCCATGCGGTGGTGCCATCCCTTTGTGC ATGGTGGGTGAGTTCGACCTCCCACTGGACATTATAGATCGGAGAGTGACCAAGATGAAGATGATCTCTCCTTCTAATGTGGCCGTTGATATTGGACGAA CTTTGAAGCCTCACGAGTACATTGGCATGGTGAGGCGTGAGGTGCTTGATGCTTACTTGAGAGAAAGAGCATCAACGAATGGGGCTAAAGTGATAAATGG TTTGTTCTTGAAAATGGACATTCCTAAAAAAGGTAGTGAAAATATTAATTCACCCTATGTCTTGCATTATACTGAGTATGATGGGAAGAAAGGTGGAACT GGAGAGAGGAAAACTTTGGAGGTTGATGTGGTTATTGGAGCTGATGGGGCAAATTCGCGTGTTGCCAAGTCCATTGATGCTGGTGATTATGACTACGCTA TTGCTTTTCAGGAGAGAATAAAAATCCCCAGTGATAAAATGGTGTACTATGAGAATTTAGCTGAGATGTATGTTGGTGACGATGTATCACCAGATTTCTA CGGGTGGGTCTTCCCCAAATGTGACCATGTTGCTGTTGGAACTGGCACGGTGACACACAAAGGTGACATAAAAAAATTTCAACTAGCCACAAGAAACAGA GCCAGGGACAAGATCCTTGGTGGTAAGATTATACGAGTGGAAGCACACCCAATACCAGAACACCCCCGGCCTCGCAGATTATCAGGGAGGGTAGCGTTAG TGGGTGATGCAGCTGGGTATGTAACCAAATGCTCCGGTGAGGGTATCTATTTCGCAGCTAAAAGTGGTAGAATGTGCGCGGAGGCAATAGTTGAGGGTTC TGGAAATGGCAAGAGGATGGTGGATGAAAGTGACCTGAGGAAATATCTGGAGAAATGGGACAAGACATACTGGCCTACATACAAGGTGTTGGATGTGTTG CAGAAAGTTTTCTATAGATCAAACCCAGCTAGAGAAGCTTTTGTGGAGATGTGCGCGGATGAGTACGTGCAAAAGATGACATTTGATAGCTATTTGTACA AGAGGGTAGTGCCTGGGAACCCCTTGGAGGATTTGAAGTTAGCTGTGAATACCATTGGGAGCTTGGTGAGGGCTAACGCACTCAGAAGGGAAATGGACAA GCTTAGTGCATGA
AA sequence Show only first row Show all	>Potri.012G068801.1 pacid=42782692 polypeptide=Potri.012G068801.1.p locus=Potri.012G068801 ID=Potri.012G068801.1.v4.1 annot-version=v4.1 MASSIVFKSFTGLRHSSQEHPKVLHSHTNPISSFSYRRFRITASKSSPKLQNRNLRVAVIGGGPAGGAAAETLAKGGIETYLIERKLDNCKPCGGAIPLC MVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRERASTNGAKVINGLFLKMDIPKKGSENINSPYVLHYTEYDGKKGGT GERKTLEVDVVIGADGANSRVAKSIDAGDYDYAIAFQERIKIPSDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNR ARDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSGNGKRMVDESDLRKYLEKWDKTYWPTYKVLDVL QKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74470			Pyridine nucleotide-disulphide...		Potri.012G068801 [exp]	0	1
AT5G19940			Plastid-lipid associated prote...		Potri.006G276400 [exp]	1.73	0.9834
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.009G000100 [exp]	3.16	0.9699
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Potri.014G172400 [exp]	5.65	0.9830	LHCA3*1.1,Lhca3
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Potri.002G055700 [exp]	6.00	0.9823	Pt-OEE2.2
AT3G61470		LHCA2	photosystem I light harvesting...		Potri.001G056700 [exp]	6.32	0.9825
AT5G13770			Pentatricopeptide repeat (PPR-...		Potri.010G098700 [exp]	8.12	0.9571
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Potri.014G155800 [exp]	8.24	0.9571	HPL1.1
AT5G67150			HXXXD-type acyl-transferase fa...		Potri.003G057200 [exp]	9.00	0.9703
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.018G088500 [exp]	9.16	0.9597
AT5G25630			Tetratricopeptide repeat (TPR)...		Potri.018G037200 [exp]	9.79	0.9582

Compare expression of checked genes

Potri.012G068801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.