Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47610 408 / 2e-141 transcription regulators;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168100 [exp] 282 / 2e-94 AT3G47610 238 / 2e-77 transcription regulators;zinc ion binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023596 [exp] 432 / 3e-150 AT3G47610 466 / 2e-163 transcription regulators;zinc ion binding (.1) Lus10024226 [exp] 387 / 6e-133 AT3G47610 421 / 5e-146 transcription regulators;zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06221 [poplar] [flax] zf-C2HC5 Putative zinc finger motif, C2HC5-type
Representative CDS sequence Show only first row Show all	>Potri.012G068900.3 pacid=42783038 polypeptide=Potri.012G068900.3.p locus=Potri.012G068900 ID=Potri.012G068900.3.v4.1 annot-version=v4.1 ATGGCATTGGTCATGGAATCGGCAGGGAAGTGGTTGGAGAAAACGCTGGTAGATTTGGATTTGGATTTGGATAGGGATATAATATCTGGGTTGGTCTCCT ATTGCGAACTCGCTCAACCTCTCGACGCCAAAGAGTATCTCCTTAATATTATTGGCCAGGAAGCCAGCAAAGGTGTGATTGAGGAATATTTACAGCGTAG AGGTCAATCAACTCTTGTCAGTAGCGCACCAGCTGCTCAATCTTCAAAACTTCAGCCATACATCAAACCACTAACAGAAAACTATGTTGTCTCTGGAGGC AAGCAACAAGCTAGAACATCTAAAGATATAGTTTCCAGTGATCAGGGACAGGCAGAGCCAAAAACAAATACTGTTTCAAGACATATAGGAAATAGGGGTC CAGCTGAGGCCAGTGAGTCGAGGCAAAAAGGAATCCAAGGTAAGTCTAGGAAGAAGAAAGCTGGAAAAGTCGTTTCACTTGCAGAGGCTGCCAAAGGGTC ATTTGTCTTCCAGCAGGGGAAGCCATGCCCATGTCAAGCCCGTCAGCATAGACTGGTGAGTAATTGCTTATCCTGTGGCAAGATTGTCTGCGAACAAGAA GGAGAGGGGCCTTGCAGTTTCTGCGGTGCCCTTGTGTTAAAGGAAGGAAGTACGTATGCTGGTCTTGAAGAAAGCATGGCTCCTACATCAGATGCTGAAT TTGCAGCTGAGGCTTATGCTAAAAGGCTTGTGGAGTATGATCGAAATTCTGCAGCACGTACAACTGTTATTGACGACCAAAGTGATTACTATGAGATAGA AGGCAACAGCTGGCTATCAAATGAGGAGAAGCAACTCTTGAGGAAGAAACAAGAGGAAACAGAAGAAGCAGAACTGGCCAAGAGAAGTAAAGTGGTTGTG ACTTTTGATTTGGTTGGACGCAAGGTCCTCTTGAATCAAGATGATGTTGAAGAACTCAAGTCTGAGAACAGAATACTTCGGCCGCTAGATGAAGGAGGCA GGGAAGTGAACCGAATTAAACCAAACCCAAGTCTTCGAATACAACCTGTTTTTTTGGATCCAGGACCTAGTAGAAAGCCTGCTAAGGGCAAGCAATCAAA CAAGGGCGGCCTTTCCAAAGGTTTGTGCATGGAGATAACTGGTAGGGTGCAGCATGACAGAATGAATTGA
AA sequence Show only first row Show all	>Potri.012G068900.3 pacid=42783038 polypeptide=Potri.012G068900.3.p locus=Potri.012G068900 ID=Potri.012G068900.3.v4.1 annot-version=v4.1 MALVMESAGKWLEKTLVDLDLDLDRDIISGLVSYCELAQPLDAKEYLLNIIGQEASKGVIEEYLQRRGQSTLVSSAPAAQSSKLQPYIKPLTENYVVSGG KQQARTSKDIVSSDQGQAEPKTNTVSRHIGNRGPAEASESRQKGIQGKSRKKKAGKVVSLAEAAKGSFVFQQGKPCPCQARQHRLVSNCLSCGKIVCEQE GEGPCSFCGALVLKEGSTYAGLEESMAPTSDAEFAAEAYAKRLVEYDRNSAARTTVIDDQSDYYEIEGNSWLSNEEKQLLRKKQEETEEAELAKRSKVVV TFDLVGRKVLLNQDDVEELKSENRILRPLDEGGREVNRIKPNPSLRIQPVFLDPGPSRKPAKGKQSNKGGLSKGLCMEITGRVQHDRMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47610			transcription regulators;zinc ...		Potri.012G068900 [exp]	0	1
AT5G46170			F-box family protein (.1)		Potri.011G082900 [exp]	6.32	0.7552
AT4G24530			O-fucosyltransferase family pr...		Potri.002G105800 [exp]	6.48	0.7614
AT3G45770			Polyketide synthase, enoylredu...		Potri.001G233300 [exp]	6.70	0.7518
					Potri.001G131500 [exp]	7.34	0.7612
AT5G52580			RabGAP/TBC domain-containing p...		Potri.006G066300 [exp]	10.95	0.7498
AT4G32750			unknown protein		Potri.006G241200 [exp]	11.31	0.7495
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Potri.016G086600 [exp]	18.76	0.6830
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Potri.001G200100 [exp]	21.63	0.7416	CYP90.1
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.011G166400 [exp]	24.33	0.7349	Pt-VCS.2
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104100 [exp]	26.00	0.7415

Compare expression of checked genes

Potri.012G068900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.