Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26850 981 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 857 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 694 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 676 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 672 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 660 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 557 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G19120 490 / 4e-167 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G31850 482 / 6e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G00740 469 / 1e-158 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094100 [exp] 992 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G147800 [exp] 982 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.003G087600 [exp] 910 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 899 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 714 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 709 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 700 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 693 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 677 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039385 [exp] 1034 / 0 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 977 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 969 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 966 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 963 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10003014 [exp] 855 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 855 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008619 [exp] 801 / 0 AT1G26850 727 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10042197 [exp] 787 / 0 AT1G26850 706 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10006626 [exp] 767 / 0 AT1G26850 702 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.012G069000.4 pacid=42782719 polypeptide=Potri.012G069000.4.p locus=Potri.012G069000 ID=Potri.012G069000.4.v4.1 annot-version=v4.1 ATGAGAAGAGAAGAAAAAGCAGTTGTATTTCTTAATTTTAATTCCGACAACATTTCTTCATATCACAGGTGCGTTATGGCTACAAAAGGGAATTCAGGAG ACCGCAAAAGCAATAACAGTTTGTTTTCCATATTTGTGATTGCGGGTTTATGCTGTTTCTTCTACATCCTGGGTGCTTGGCAGCGAAGTGGCTTTGGAAA GGGTGATAACATAGCCTTAGAGATCTCCAAACAGACAGATTGCAGTGTTTTCAACAATCTTAATTATCAGAAAAGTGGTGATGCTGGCATGATTGATGAT GGAGCACAAGTCAAGGAGTTTAAGCCCTGTGAAGACAAGTACATCGATTATACGCCTTGTCAGGATCAAATGAGAGCAATGACGTTTCCACGAGATAATA TGATCTACAGGGAACGCCATTGCCCTCCTGACAACGAGAAGCTGCCCTGCCTTATTCCAGCACCAAAAGGATATGCAAACCCATTTCCTTGGCCCAAGAG TCGCGACTATGTACCCTTTGTTAATGCTCCTTATAAGAGCTTGACCGTTGAGAAGGCTGTTCAGAACTGGATTCAGTACGAGGGCAACGTGTTTAGGTTC CCTGGTGGAGGAACGCAGTTTCCTCATGGAGCAGATGCCTATATTAATGAACTCGCTTCTGTTATCCCCATGGATAATGGAATTGTTAGAACTGCTTTAG ATACTGGATGTGGGGTTGCAAGTTGGGGTGCGTACCTTTTCAAAAAGAATGTTATAGCTATGTCGTTTGCACCAAGGGACTCTCATGAATCACAAATTCA ATTTGCATTGGAAAGAGGCGTTCCTGCTGTTATTGGTGTTCTTGGAACTATCAAGCTTCCATATCCATCTAGAGCCTTCGACATGGCCCACTGTTCTCGT TGCCTGATCCCTTGGGGTGCTAATGATGGAATGTACATGATGGAAATTGACCGTGTTCTTAGACCTGGTGGTTATTGGGTGCTTTCTGGTCCCCCCATTA ACTGGAAGAATAATTACCAAGCATGGCAGCGTCCTAAAGAGGAACTGGATGAGGAACAAAGGAAGATCGAAGAGGTTGCCAAACTTCTTTGCTGGGAAAA GAAGCATGAGATTGGTGAAATAGCTATCTGGCAGAAAAGAATAAATAATGATTTTTGCCGTGAGCAGGATCCTAAACCAACCATGTGTAAATCAACAAAT CCAGATGATGTTTGGTACAAGAAAATGGAGGCATGTGTAACTCCTCATCCTGAGACAGATGAAGTCACTGGTGCAGCATGGCAGCCATTTTCAGAGAGAC TTAATGCTGTTCCTTCCAGAATATCCAGTGGCTCCATTCCAGGATTGTCAGTTGAGACATTCCTAGAGGACAGTCGAACATGGAAGAAGCATGTCAATGC CTATAAGAGGATAAACAATGTCATTGACTCAGGGAGGTATCGCAACATTATGGACATGAATGCTGGCATGGGAGGCTTTGCTGCAGCTCTTGAATCTCCA AAATTGTGGGTTATGAATGTTATGCCCACAATAAATGAAAGAGACACTCTGGGTGTTATATATGAGCGTGGCTTGATTGGCATATATCATGATTGGTGTG AAGCATTCTCCACTTACCCAAGGACATATGATCTTATTCATGCAAATGGTGTTTTCAGCTTGTATAAAGACAAGTGCAATATGGAAGACATTCTTCTAGA GATGGATCGTATTTTAAGGCCTGAAGGAGCAGTCATATTCCGTGATAAAGTTGATGTGCTTATCAAGGTGAGGAGAATTGTGGGAGGAATGAGATGGAAT GCGAAAATGGTGGATCATGAGGATGGGCCGCTTCCGTCAGAAAAAGTGTTGTTCACCGTCAAACAATACTGGGTTGCAGGCGAAAACAATAGCACTTCAT CACAGTGA
AA sequence Show only first row Show all	>Potri.012G069000.4 pacid=42782719 polypeptide=Potri.012G069000.4.p locus=Potri.012G069000 ID=Potri.012G069000.4.v4.1 annot-version=v4.1 MRREEKAVVFLNFNSDNISSYHRCVMATKGNSGDRKSNNSLFSIFVIAGLCCFFYILGAWQRSGFGKGDNIALEISKQTDCSVFNNLNYQKSGDAGMIDD GAQVKEFKPCEDKYIDYTPCQDQMRAMTFPRDNMIYRERHCPPDNEKLPCLIPAPKGYANPFPWPKSRDYVPFVNAPYKSLTVEKAVQNWIQYEGNVFRF PGGGTQFPHGADAYINELASVIPMDNGIVRTALDTGCGVASWGAYLFKKNVIAMSFAPRDSHESQIQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSR CLIPWGANDGMYMMEIDRVLRPGGYWVLSGPPINWKNNYQAWQRPKEELDEEQRKIEEVAKLLCWEKKHEIGEIAIWQKRINNDFCREQDPKPTMCKSTN PDDVWYKKMEACVTPHPETDEVTGAAWQPFSERLNAVPSRISSGSIPGLSVETFLEDSRTWKKHVNAYKRINNVIDSGRYRNIMDMNAGMGGFAAALESP KLWVMNVMPTINERDTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHANGVFSLYKDKCNMEDILLEMDRILRPEGAVIFRDKVDVLIKVRRIVGGMRWN AKMVDHEDGPLPSEKVLFTVKQYWVAGENNSTSSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26850			S-adenosyl-L-methionine-depend...		Potri.012G069000 [exp]	0	1
AT5G49690			UDP-Glycosyltransferase superf...		Potri.003G184400 [exp]	21.09	0.8832
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.006G085200 [exp]	23.68	0.8617
AT4G21580			oxidoreductase, zinc-binding d...		Potri.004G036100 [exp]	33.39	0.8254
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G099400 [exp]	33.88	0.8468
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.010G011300 [exp]	37.46	0.8585
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G105300 [exp]	38.72	0.8549
AT1G33780			Protein of unknown function (D...		Potri.019G073000 [exp]	41.13	0.8750
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101500 [exp]	68.84	0.8242
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Potri.003G218100 [exp]	73.19	0.8688
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.010G203400 [exp]	82.84	0.8318

Compare expression of checked genes

Potri.012G069000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.