Plant FIBer expression Database

Pt-ATEB1.3 (Potri.012G069400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ATEB1.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G47690 423 / 5e-151 ATEB1A, ATEB1H2 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1)
AT5G62500 422 / 2e-150 ATEB1B end binding protein 1B (.1)
AT5G67270 306 / 3e-104 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G062900
[exp]
511 / 0 AT5G62500 421 / 3e-150 end binding protein 1B (.1)
Potri.007G048700
[exp]
332 / 3e-114 AT5G67270 436 / 8e-155 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Potri.005G142200
[exp]
331 / 3e-114 AT5G67270 442 / 5e-157 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023606
[exp]
441 / 4e-158 AT5G62500 397 / 6e-141 end binding protein 1B (.1)
Lus10024235
[exp]
435 / 2e-155 AT5G62500 388 / 1e-136 end binding protein 1B (.1)
Lus10019316
[exp]
305 / 1e-103 AT5G67270 402 / 4e-141 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Lus10011508
[exp]
295 / 2e-99 AT5G67270 400 / 1e-140 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0188 CH PF00307 CH Calponin homology (CH) domain
CL0188 PF03271 EB1 EB1-like C-terminal motif
Representative CDS sequence
>Potri.012G069400.1 pacid=42783082 polypeptide=Potri.012G069400.1.p locus=Potri.012G069400 ID=Potri.012G069400.1.v4.1 annot-version=v4.1
ATGGCGTCGAATATAGGGATGATGGACAGTGCGTATTTTGTCGGAAGAAATGAGATATTAACATGGATCAACAACAGACTTCAGCTCAATCTCTCTCGTA
TTGAAGAGGCTGCTTCTGGTGCGGTGCAGTGTCAGATGATGGACATGACTTATCCAGGAGTTGTGCCTATGCACAAGGTGAATTTTGATGCGAAGACAGA
ATATGATATGATCCAAAATTACAAGGTTCTGCAAGATGTATTCAACAAGTTGAAAATTGAGAAGCATATTGAAGTTAACAGGCTTGTTAAAGGAAGGCCA
TTGGACAACTTGGAATTCTTACAATGGCTGAAACGATACTGTGACTCTGTAAATGGTGGAATCATGAATGAGAACTATAATCCTGTGGAACGGAGAAGTA
AGGGTGGGAAGGACCGTAACTCTAAGGGTTCTCAGAAGACCACGAAATCACTGCAAGCAAACAATTTGCATAACTCTGCCTCTAGTGACACAGTTGACCT
GAATAAAATGTCCGGGCCAAAGCAAGGTAGGGGAAGTGCTGTGGCAGGTGGAGCAACTTATTCAGAGGAGATTCAAGCCTTGTCCAAGGAGGTTACAAAT
CTCAAGCTCTCAGTGGACCATCTGGAAAAAGAAAGAGATTTTTACTTTGCGAAGCTGCGAGATATAGAAATACTATGTCAGATTCCTGAAATGGAGGACC
TACCGATGACAGTTGCAATAAAAAAGATACTGTACGCTGATGATGCCAAGGAATCTGCACTTGAAGAAGCTCAGGAATATTTATCTGAAGCTATCAATAC
TGTTGAGACTGAAGTTGAAAGTGAGGCTTGA
AA sequence
>Potri.012G069400.1 pacid=42783082 polypeptide=Potri.012G069400.1.p locus=Potri.012G069400 ID=Potri.012G069400.1.v4.1 annot-version=v4.1
MASNIGMMDSAYFVGRNEILTWINNRLQLNLSRIEEAASGAVQCQMMDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNRLVKGRP
LDNLEFLQWLKRYCDSVNGGIMNENYNPVERRSKGGKDRNSKGSQKTTKSLQANNLHNSASSDTVDLNKMSGPKQGRGSAVAGGATYSEEIQALSKEVTN
LKLSVDHLEKERDFYFAKLRDIEILCQIPEMEDLPMTVAIKKILYADDAKESALEEAQEYLSEAINTVETEVESEA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G47690 ATEB1A, ATEB1H2 ATEB1-HOMOLOG2, ARABIDOPSIS TH... Potri.012G069400
[exp]
0 1 Pt-ATEB1.3
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.009G012200
[exp]
2.64 0.9614 FLA14.12
AT1G33720 CYP76C6 "cytochrome P450, family 76, s... Potri.001G109300
[exp]
4.00 0.9578
AT1G19600 pfkB-like carbohydrate kinase ... Potri.002G034000
[exp]
7.07 0.9387
AT5G15630 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4... Potri.004G117200
[exp]
7.74 0.9553
Potri.003G083000
[exp]
8.94 0.9424
AT1G74910 ADP-glucose pyrophosphorylase ... Potri.015G070500
[exp]
9.05 0.8265
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.012G015032
[exp]
9.16 0.9459
AT2G22620 Rhamnogalacturonate lyase fami... Potri.014G004500
[exp]
10.81 0.9411
AT5G36000 unknown protein Potri.014G098300
[exp]
11.22 0.9127
AT1G49960 Xanthine/uracil permease famil... Potri.009G086800
[exp]
12.00 0.9241

Potri.012G069400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.