Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrAOH3,ATH2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47780 1139 / 0 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT3G47740 1086 / 0 ATATH2, ABCA3 A. THALIANA ABC2 HOMOLOG 2, ATP-binding cassette A3, ABC2 homolog 2 (.1) AT3G47790 1063 / 0 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT3G47750 1055 / 0 ATATH3, ABCA4 ATP-binding cassette A4, ATP binding cassette subfamily A4 (.1) AT5G61700 991 / 0 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1) AT3G47770 988 / 0 ATATH5, ABCA6 A. THALIANA ABC2 HOMOLOG 5, ATP-binding cassette A6, ABC2 homolog 5 (.1) AT3G47760 976 / 0 ATATH4, ABCA5 A. THALIANA ABC2 HOMOLOG 4, ATP-binding cassette A5, ABC2 homolog 4 (.1) AT5G61740 930 / 0 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1) AT3G47730 264 / 2e-74 ABCA2, ATATH1 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) AT5G61730 258 / 2e-72 ABCA9, ATATH11 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063400 [exp] 1615 / 0 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.012G069800 [exp] 254 / 5e-71 AT3G47730 1245 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.006G049300 [exp] 254 / 1e-69 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.015G063500 [exp] 246 / 3e-68 AT3G47730 1288 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.013G123401 [exp] 179 / 4e-51 AT3G47790 135 / 3e-36 ATP-binding cassette A8, ABC2 homolog 7 (.1) Potri.014G137000 [exp] 94 / 2e-20 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.002G212701 [exp] 89 / 2e-18 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.006G074400 [exp] 88 / 2e-17 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.015G027600 [exp] 86 / 8e-17 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023612 [exp] 1289 / 0 AT3G47780 1202 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10024243 [exp] 578 / 0 AT3G47780 530 / 1e-178 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10023613 [exp] 257 / 8e-72 AT3G47730 1360 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10024244 [exp] 253 / 1e-70 AT3G47730 1349 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10012755 [exp] 225 / 3e-60 AT2G41700 2655 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10023157 [exp] 223 / 2e-59 AT2G41700 1486 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10004262 [exp] 185 / 2e-48 AT3G47730 840 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10020188 [exp] 90 / 8e-19 AT1G65410 500 / 2e-179 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10004583 [exp] 91 / 3e-18 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10039533 [exp] 91 / 3e-18 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF12698 [poplar] [flax] ABC2_membrane_3 ABC-2 family transporter protein
Representative CDS sequence Show only first row Show all	>Potri.012G069700.2 pacid=42783444 polypeptide=Potri.012G069700.2.p locus=Potri.012G069700 ID=Potri.012G069700.2.v4.1 annot-version=v4.1 ATGGCGGATTCCGATGCATCGCCTCACACGGCAGCTTTCTGGATTCAGGCTGATGCTTTGCTCAGGAAGAACTTAACTTATCAGAAACGAAACATCAGTG CGAATTGCAGGCTAATCTCATTTCCATTCGTGCTCTGTATCCTCCTTATCATCACTCAAACACTGGTTGACAATCAAATAAGCAAAGATAGTAACGTGTG CGGTTGTCAGTGTATCGATAACAATGGAGATGGAACGTGTGATCAGAGAGTGTGTGGTTTACAATACTCAGATGTGGATCAAGCCCCTAGTTGTTCTGTT CCTAGTCCACCCAAGTGGCCTCCTCTGTTACAGGTTCCGGGTCCTCAATATCGTGCCGTCAGAAGTGCTTCTGATTCTCTTAGTGATTTTCCGGACGAGT CTTGTAGACAAAACGGCACCTGTCCTGTTTCTCTTCTTATCACCGGAACTAATAAGACGCTTGGGCAAAGTTTGGCTGACATGATGTTCGCAGCTCCTTC CATTCTTAATTCCACCAACAGTGTGCTGGGTTCAAATTCAGAACCTCAACAGGACAATTTTCTTGATCCTGCTTTCGCCGAGGGTTCTCTCTATAACATT CAAAGTCAGTGCACACCGAATTCTATATTCAATGTTTCTGTTCCCCTTCTTCAGGCTGCTCCCTTCCAAAATGTGACCACATGTGTTCAAAGTATAAGTT TGTGGCGCAATAGTTCTTCGGAGATAAATGATCAGATATACCGGGGCTATGAAAAAGGCAATGCAGAGAGGACGTATAACGAGATACTTGGAGCCTATGA TTTCTTAAACTCCGATGCCAATAATTTTAATGTGAATGTGTGGTACAATGCCACCTACAAGGATTCTAGCGATGGGGAAACCTACTTGGTGCGGTTACCA CGTGCAGTAAATCTGGTATCGAATGCCTACCTTCAGTCGTTTCGAGGATCTGGTGTTAAAATGATATTAGACTTTGTCAAAGAAATGCCTAAAACTTCAA CAAAGCTCAAGCTGGATATCGCATCTCTTCTTGGCACTCTCTTCTTTACATGGGTTGTCATACAACTGTTTCCGGTGGTGCTGACAGCACTGGTTTATGA GAAACAACAGAAACTACGGATCATGATGAAAATGCATGGGCTTGGAGATGGGCCTTATTGGATGATTTCTTATATGTATTTTCTTGCTATATCTGCACTA TACATGTTCGTTTTTGTGGCATTTGGCTCAATAGTAGGTTTGAAATTCTTCACGCTGAACGACTACTTCATCCAATTTTTGTTTTATTTTCTCTATATAA ACCTGCAAATTTCCTTGGCGTTCCTGGTCTCCGCATTCTTTTCGAATGTCAAGACTGCTACAGTTGTAGGCTATATATGTGTCTTTGGAACTGGGCTTTT AGGTGGCTTTCTTTTCCAGTCCTTCGTTGAAGACACTTCATTCCCAAAGGGATGGATCATATTCATGGAGTTATATCCTGGTTTCGCTCTATATCGTGGC TTGTACGAGTTTGCAGAGTATTCCTTACAAGGCAACTCCATGGGGACTGATGGCATGAAGTGGGGAAATTTGAGTGACAGTGAAAATGGGATGAGCGACG TGATGATTATCATGCTTCTTGAATGGTTGGCGGTGCTTTGTATAGCCTATTATGTGGATCAAATTTTTGCATCTGGGAGTGGAAAAAATCCAAAATATTT ATTGCAAAAGTTTCGGAAGAAGCGTCCATCATCTTTTCAGAAGCCTAGTTTGGGCAGGCAGGCATCTAAAGTTTTTGTTGATATGGATAAACCTGATGTC ATTCAGGAGAGGGAGAAGGTCGAGCAGATACTGCTGGAACCAACAACAACTCATTCAATCGTCTGTGACAACCTGAGAAAGGTGTATCCCGGAAGGGATG GAAATCCAGAGAAATTGGCAGTGAGAGGATTATCTCTCGCTATACCTCGAGGGGAGTGCTTCGGCATGCTTGGTCCAAATGGTGCAGGGAAAACCTCGTT TATTAGTATGATGATTGGGCTCACAGCACCCAGCACGGGGACAGCATATGTCGAGGGCTTAGACATACGGACTCAAATGGATTGGGTATATACCAGCATG GGCGTTTGCCCGCAGCACGACTTGCTGTGGGAAACTCTGACGGGAAGAGAACACCTGCTATTTTATGGCCGGCTAAAGAACCTAAAAGGCGCTGCTTTGA AAAAAGCAGTGGAAGACTCTCTTAAGAGCGTCAACCTATTTAACGGAGGGGTTGCTGACAAACAAGCTGGGAAATACAGTGGAGGTATGAAGAGGAGGCT TAGCGTTGCCATATCACTGATTGGAGATCCCAAAGTTGTTTATATGGATGAACCCAGTACTGGATTAGATCCGGCTTCAAGAAGCAATTTATGGAATGTT GTGAAGCGTGCAAAGCAAGACCGAGCAATTATTCTGACCACACATTCGATGGAAGAGGCAGAGTACCTGTGTGATAGGCTGGGGATTTTTGTTAGTGGAG GCTTACAGTGCGTAGGAAACCCAAAAGAGCTGAAGGCTAGATATGGAGGATCTTACGTGTTCACAATGACGACATCTATAAACGATGAGCATGAGGTGGA GCGCATGGTTCAGCGTCTCTCCCCCAACGCCGAAAGAACATACCATATGGCTGGAACCCAGAAGTTTGAGATGCCAAAACATGAGGTCAGCATGGCAGAT GTATTCCATGCAGTCGAGGTTGCAAAGAGCAGGTTCCCGGTTTATGCATGGGGCTTGTCGGATACCACCTTAGAAGATGTCTTCATCAAGGTGGCGAATT CAGCCCAAGAATTCCACACGCTTACATGA
AA sequence Show only first row Show all	>Potri.012G069700.2 pacid=42783444 polypeptide=Potri.012G069700.2.p locus=Potri.012G069700 ID=Potri.012G069700.2.v4.1 annot-version=v4.1 MADSDASPHTAAFWIQADALLRKNLTYQKRNISANCRLISFPFVLCILLIITQTLVDNQISKDSNVCGCQCIDNNGDGTCDQRVCGLQYSDVDQAPSCSV PSPPKWPPLLQVPGPQYRAVRSASDSLSDFPDESCRQNGTCPVSLLITGTNKTLGQSLADMMFAAPSILNSTNSVLGSNSEPQQDNFLDPAFAEGSLYNI QSQCTPNSIFNVSVPLLQAAPFQNVTTCVQSISLWRNSSSEINDQIYRGYEKGNAERTYNEILGAYDFLNSDANNFNVNVWYNATYKDSSDGETYLVRLP RAVNLVSNAYLQSFRGSGVKMILDFVKEMPKTSTKLKLDIASLLGTLFFTWVVIQLFPVVLTALVYEKQQKLRIMMKMHGLGDGPYWMISYMYFLAISAL YMFVFVAFGSIVGLKFFTLNDYFIQFLFYFLYINLQISLAFLVSAFFSNVKTATVVGYICVFGTGLLGGFLFQSFVEDTSFPKGWIIFMELYPGFALYRG LYEFAEYSLQGNSMGTDGMKWGNLSDSENGMSDVMIIMLLEWLAVLCIAYYVDQIFASGSGKNPKYLLQKFRKKRPSSFQKPSLGRQASKVFVDMDKPDV IQEREKVEQILLEPTTTHSIVCDNLRKVYPGRDGNPEKLAVRGLSLAIPRGECFGMLGPNGAGKTSFISMMIGLTAPSTGTAYVEGLDIRTQMDWVYTSM GVCPQHDLLWETLTGREHLLFYGRLKNLKGAALKKAVEDSLKSVNLFNGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRSNLWNV VKRAKQDRAIILTTHSMEEAEYLCDRLGIFVSGGLQCVGNPKELKARYGGSYVFTMTTSINDEHEVERMVQRLSPNAERTYHMAGTQKFEMPKHEVSMAD VFHAVEVAKSRFPVYAWGLSDTTLEDVFIKVANSAQEFHTLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Potri.012G069700 [exp]	0	1	PtrAOH3,ATH2.3
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Potri.012G069800 [exp]	1.00	0.9597	PtrATH2,Pt-ATH1.2
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.016G068600 [exp]	1.41	0.9473	Pt-SYP121.1
AT1G64160			Disease resistance-responsive ...		Potri.003G134600 [exp]	3.00	0.9076
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	4.58	0.9280
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009500 [exp]	5.47	0.9063
AT5G47220	AP2_ERF	ATERF-2, ERF2, ...	ETHYLENE RESPONSE FACTOR- 2, e...		Potri.004G051700 [exp]	6.32	0.8915
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	8.94	0.9083
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.006G022000 [exp]	9.38	0.9238
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Potri.004G007500 [exp]	10.39	0.9178	Pt-WRKY6.1
AT3G01360			Family of unknown function (DU...		Potri.005G122800 [exp]	12.08	0.8539

Compare expression of checked genes

Potri.012G069700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.