Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrATH2,Pt-ATH1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47730 1246 / 0 ABCA2, ATATH1 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) AT5G61730 1148 / 0 ABCA9, ATATH11 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) AT5G61690 1134 / 0 ABCA11, ATATH15 ARABIDOPSIS THALIANA ABC2 HOMOLOG 15, ATP-binding cassette A11, ABC2 homolog 15 (.1) AT3G47780 223 / 2e-60 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT2G41700 224 / 5e-60 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) AT3G47790 213 / 4e-57 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT3G47770 203 / 6e-54 ATATH5, ABCA6 A. THALIANA ABC2 HOMOLOG 5, ATP-binding cassette A6, ABC2 homolog 5 (.1) AT5G61700 200 / 5e-53 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1) AT5G61740 198 / 1e-52 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1) AT3G47760 198 / 2e-52 ATATH4, ABCA5 A. THALIANA ABC2 HOMOLOG 4, ATP-binding cassette A5, ABC2 homolog 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063500 [exp] 1575 / 0 AT3G47730 1288 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.006G049300 [exp] 228 / 5e-61 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.015G063400 [exp] 221 / 1e-59 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.012G069700 [exp] 219 / 3e-59 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.018G132000 [exp] 67 / 1e-11 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.015G027600 [exp] 67 / 3e-11 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 65 / 2e-10 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 64 / 4e-10 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.015G036100 [exp] 63 / 7e-10 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024244 [exp] 1277 / 0 AT3G47730 1349 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10023613 [exp] 1274 / 0 AT3G47730 1360 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10004262 [exp] 744 / 0 AT3G47730 840 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10042172 [exp] 354 / 9e-111 AT5G61730 449 / 5e-147 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) Lus10012755 [exp] 203 / 4e-53 AT2G41700 2655 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10023612 [exp] 192 / 3e-50 AT3G47780 1202 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10023157 [exp] 179 / 2e-45 AT2G41700 1486 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10029905 [exp] 72 / 2e-12 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 71 / 4e-12 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10027353 [exp] 66 / 8e-11 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF12698 [poplar] [flax] ABC2_membrane_3 ABC-2 family transporter protein
Representative CDS sequence Show only first row Show all	>Potri.012G069800.1 pacid=42782662 polypeptide=Potri.012G069800.1.p locus=Potri.012G069800 ID=Potri.012G069800.1.v4.1 annot-version=v4.1 ATGGAGCTGGTACAAGGATTGCCGTTACTGTACCAACAGTTCACTTCGTTGTTCAAGAAAAACATCTTGTTGTCATCAAGAAACAAGAGCGCAACATTCT TGCAGCTCTTTGCTTCTTTCTTTTTCATGTTCTTGTTGTTCTGCATCGAAAAGGCAACAGAGTCTCGCACGAACACAACGACAGGGTTCGACACGGTGAG GAATCCACAGCCTATGTGGGAGCCTCCGATCACTCCTTGCGAGGAAAAGTTCTACGTTAAAAAGCCTTGTTATGACTTCGTTTGGAGTGGAAATGACAGC GCTACAATTACCAGTATTGTTACAGCCATCATGCAGAATAATCCCAACAGGCCAATTCCCTCTGACAAGGTGAGATCATTCAGAACAGAACAAGAAGTCG ATGATTGGCTTCTTAGAGAACCTATGCAAGCACCAGCAGCACTGCATTTTGTGCAAGTGAACGCCACTGTGATCACCTATGGTCTACAGTCTAACTCTAC TCCAATTGCTCGGCGAGGCCATTATGAAGATCCAACCTTCAAATTTCAAATTCCACTTCAAATTGCGGCAGAGCGTGAGATTGCTCGGTTTCTTTTGGAA GCTTCAACCTTTAACTGGAAGGTTGGACTTACGGAATTTGCGCATCCCGCAAGGCCTGCTTTCTCTGCATTGGCTACAGTAGGACCGGCTTTTTTCCTGG CATTTACCATGTTTGGATTTGTGTTACAAATTAGTAATTTGGTTGCTGAGAAAGAGCTCAAACTTCGCCAGGCAATGAATATGACTGGTCTTTACGAATC TGCATACTGGGCCTCATGGATCTCATGGGAGGGAATCATTACGTTCATTTCCTCACTTTTCCTGGTTCTCTTCGGATTGATGTTCCAGTTCGATTTTTTC AAGAAAAACAATTTCGGAGTTCTGTTCTTTGTCTTCTTCCTCTTCCAGATCAACATGATGGGTTTTGCCTTCATGCTGTCGACCTTCATCAGCAAGGCAT CATCAGGCACGACAATGGGTTTCTCCATATTTATAATCGGATTTATGACTCAGATTATTACAATAGCTGGATTTCCATACAAGGAAAGCATTAGTGGTTT CTTACAGTTCATCTGGTCATTCTTCCCACCAAATCTTCTCGCAATAGCAGTAAAGCTGCTCTCCGATGCAAGTAACACTCCTGAAGATCTTGGAATCAGC TGGAAAGGACGATCAAAGTGTTCACCTGACGCTGATGACTGTGCTATCACAATTAATGATGTTTACACATGGCTCATATGTCTGTTCTTTCTCTGGTTTG TTTTGGCAATCTACTTTGATAATATATTCCCAAATGCATCCGGTGTGAGAAAATCTCCTTTTTACTTCTTAAACCGTGGGTATTGGACAGGGAAAGGTGG AGACAAGGTCGAAGAGGGTGGCATTTGTAGTTGCACGGGTGAAATCCCACAACAAGAGCATATTACTCCAGATGATGAAGATGTGCTTGAAGAGGAGAAT GTCGTAAAAAATGATGCAAAAGAAGGCACAGTCAACCCAGATGTTGCAGTTCAGGTACGAGGACTTGCAAAGACATATCCTGGGACCACACAGATTAGTT GTTGTAAATGCAAGAAGACTTCATCTTACCATGCTGTTAGGGGCTTATGGGTCAACTTCACCAAGGATCAGTTATTTTGTCTGCTTGGACCCAATGGTGC CGGAAAAACTACAACAATGAATTGTTTAACTGGCATAACACCTGTGACCGGTGGAGATGCCTTGGTTTATGGACATTCTGTTCGAAGCACGGTTGGCATG TCAGGCATTCGGCAAATTATAGGAGTTTGTCCACAGTTTGACATTCTCTGGGATGCATTGTCCGGTGAAGAACACCTCCACCTCTTTGCAAGTATCAAAG GTCTACCCCCAGCTTCAATCAAATCGGTTGCTCAGGAATCATTGGCAAAGGTGAAACTAACTGAATCAGCGAAAGTAAGATCCAGGAGCTACAGTGGAGG AATGAGGCGTCGTTTGAGTGTTGCAATAGCCCTTCTCGGTGACCCTAAGTTAGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATATCAAGAAGG CATGTGTGGGATATTATACAGAACGCAAAGAAAGGTCGTGCAATTGTTCTAACAACTCATTCAATGGAAGAAGCCGACATTCTAAGTGACCGTATAGGAA TTATGGCCAAGGGCAGGCTCCGGTGCATTGGAAACTCGATCAGGTTGAAGTCAAAGTTTGGCACTGGCTTTATTGCTAATGTGAGCTTTAGTGATAACAA TGGTGGACAAACTCCTGGACGCATGCCATCAGATACTTCAGTTCATCATGAGGCTGTGAAGAAGTTCTTTAAATACCATTTGGATGTAACGCCAACAGAG GAGACCAGATCCTTCTTGACTTTTGTCATTCCTCATGATAAAGAGAGGGTTTTAACGAAATTTTTTGCGGAGCTTCAAGAGAGACAGAGAGAATTCCATG TATCAGACATTCAGCTTGGCCTTGCAACTCTTGAAGAAGTTTTCCTAAACATTGCCAAGCAAGCAGAATTAGAAAGTGCTGCAGCCGAGGGGAAGATGGT TACTCTGGCCTTAACTTCTGGAAAATCAGTTCAGATACCTGTGGGAGCTAGATTTGTGGGGATCCCAGAAACAGAATCTCCAGAGAATCCTAGTGGCATT ATGGTTGAAGTATACTGGGAGCAAGATGATTCAGGTTCACTCTGCATTTCTAGCCACTCTGATGAAATGGCCGTACCTTATAATGCTCAGCCATTGGCTT CTGCACCACAACCGTCGGACAGAAGCAATGTGTTAGGCCCGAGGGGAGGGCCAGTTTATGGAATTGTCTACGATCCCAATCAGATTATTGCTGCTCAATC TTACTAG
AA sequence Show only first row Show all	>Potri.012G069800.1 pacid=42782662 polypeptide=Potri.012G069800.1.p locus=Potri.012G069800 ID=Potri.012G069800.1.v4.1 annot-version=v4.1 MELVQGLPLLYQQFTSLFKKNILLSSRNKSATFLQLFASFFFMFLLFCIEKATESRTNTTTGFDTVRNPQPMWEPPITPCEEKFYVKKPCYDFVWSGNDS ATITSIVTAIMQNNPNRPIPSDKVRSFRTEQEVDDWLLREPMQAPAALHFVQVNATVITYGLQSNSTPIARRGHYEDPTFKFQIPLQIAAEREIARFLLE ASTFNWKVGLTEFAHPARPAFSALATVGPAFFLAFTMFGFVLQISNLVAEKELKLRQAMNMTGLYESAYWASWISWEGIITFISSLFLVLFGLMFQFDFF KKNNFGVLFFVFFLFQINMMGFAFMLSTFISKASSGTTMGFSIFIIGFMTQIITIAGFPYKESISGFLQFIWSFFPPNLLAIAVKLLSDASNTPEDLGIS WKGRSKCSPDADDCAITINDVYTWLICLFFLWFVLAIYFDNIFPNASGVRKSPFYFLNRGYWTGKGGDKVEEGGICSCTGEIPQQEHITPDDEDVLEEEN VVKNDAKEGTVNPDVAVQVRGLAKTYPGTTQISCCKCKKTSSYHAVRGLWVNFTKDQLFCLLGPNGAGKTTTMNCLTGITPVTGGDALVYGHSVRSTVGM SGIRQIIGVCPQFDILWDALSGEEHLHLFASIKGLPPASIKSVAQESLAKVKLTESAKVRSRSYSGGMRRRLSVAIALLGDPKLVILDEPTTGMDPISRR HVWDIIQNAKKGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGNSIRLKSKFGTGFIANVSFSDNNGGQTPGRMPSDTSVHHEAVKKFFKYHLDVTPTE ETRSFLTFVIPHDKERVLTKFFAELQERQREFHVSDIQLGLATLEEVFLNIAKQAELESAAAEGKMVTLALTSGKSVQIPVGARFVGIPETESPENPSGI MVEVYWEQDDSGSLCISSHSDEMAVPYNAQPLASAPQPSDRSNVLGPRGGPVYGIVYDPNQIIAAQSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Potri.012G069800 [exp]	0	1	PtrATH2,Pt-ATH1.2
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Potri.012G069700 [exp]	1.00	0.9597	PtrAOH3,ATH2.3
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.007G099400 [exp]	2.44	0.9024
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.016G068600 [exp]	3.74	0.9299	Pt-SYP121.1
AT1G64160			Disease resistance-responsive ...		Potri.003G134600 [exp]	6.32	0.8941
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.013G106200 [exp]	12.48	0.9000
AT1G35710			Protein kinase family protein ...		Potri.014G195200 [exp]	18.86	0.9022
AT1G29290			unknown protein		Potri.004G061300 [exp]	20.17	0.8940
AT3G28450			Leucine-rich repeat protein ki...		Potri.001G349900 [exp]	20.19	0.8820
AT3G01360			Family of unknown function (DU...		Potri.005G122800 [exp]	20.49	0.8416
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.011G057100 [exp]	22.22	0.8904

Compare expression of checked genes

Potri.012G069800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.