Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74690 387 / 8e-128 IQD31 IQ-domain 31 (.1) AT1G18840 370 / 3e-121 IQD30 IQ-domain 30 (.1.2) AT2G02790 228 / 2e-66 IQD29 IQ-domain 29 (.1) AT1G14380 224 / 3e-65 IQD28 IQ-domain 28 (.1.2.3) AT1G19870 107 / 4e-24 IQD32 IQ-domain 32 (.1) AT1G72670 83 / 9e-17 IQD8 IQ-domain 8 (.1) AT2G26180 81 / 3e-16 IQD6 IQ-domain 6 (.1) AT4G14750 81 / 3e-16 IQD19 IQ-domain 19 (.1) AT4G00820 81 / 8e-16 IQD17 IQ-domain 17 (.1) AT3G49260 80 / 1e-15 IQD21 IQ-domain 21 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063600 [exp] 907 / 0 AT1G74690 407 / 2e-135 IQ-domain 31 (.1) Potri.017G079600 [exp] 295 / 1e-92 AT1G74690 225 / 2e-66 IQ-domain 31 (.1) Potri.002G025200 [exp] 114 / 3e-26 AT1G19870 315 / 5e-95 IQ-domain 32 (.1) Potri.005G236200 [exp] 113 / 4e-26 AT1G19870 340 / 2e-104 IQ-domain 32 (.1) Potri.006G226600 [exp] 95 / 2e-20 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.018G062001 [exp] 82 / 3e-17 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.010G082600 [exp] 81 / 5e-16 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.002G178500 [exp] 79 / 2e-15 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.003G042700 [exp] 79 / 2e-15 AT1G72670 223 / 3e-68 IQ-domain 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004263 [exp] 511 / 1e-175 AT1G74690 407 / 6e-135 IQ-domain 31 (.1) Lus10042173 [exp] 511 / 5e-175 AT1G74690 400 / 3e-132 IQ-domain 31 (.1) Lus10013261 [exp] 204 / 2e-58 AT1G14380 212 / 7e-61 IQ-domain 28 (.1.2.3) Lus10030784 [exp] 201 / 1e-56 AT2G02790 214 / 3e-61 IQ-domain 29 (.1) Lus10033167 [exp] 106 / 1e-23 AT1G19870 211 / 4e-57 IQ-domain 32 (.1) Lus10014870 [exp] 91 / 1e-18 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10006613 [exp] 88 / 3e-18 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10021904 [exp] 85 / 3e-17 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10010104 [exp] 84 / 8e-17 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10012608 [exp] 84 / 1e-16 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.012G069900.2 pacid=42783300 polypeptide=Potri.012G069900.2.p locus=Potri.012G069900 ID=Potri.012G069900.2.v4.1 annot-version=v4.1 ATGGGGAGAAAATCACCTGCGAAATGGATAAAGACTGTTTTGTTTGGAAAGAAGTCTTCCAAATCTCTTATTGTCAAAGGAAGGGAGAGAACTGTGAATG ACAAAGAGACATTGGTTGCTGTCAGAGCCGTGGAAGCTGATGTGACCTCAGTTCCTCCGGTGGTCAAGCCGACAGCCCCCACTACCACTAATATCACTGA AAGGATGTTAGAGCTAGAGAGCAGGGAAACTACAGAATCATCACGTGATGGAGGTATATTGTCAACTGGAAATCAAGATGCAAATCATTCTCAATTATAC ACTCCTGATGCTCCTCCATCTGATGCTGACAAAATAAGGCTTGATGAAGCTGCGACAATGGCACAAGCCGCATTTAGGGGTTACTTGGCTCGCCGAGCAT TTCGAGCTCTTAAAGGCATAATAAGGCTTCAGGCTCTTATCCGTGGACACTTGGTTAGAAGGCAAGCTGTTGCTACTCTCTGCTGTGTGCTCGGAGTTGT CAAGTTACAGGCTCTTGCTCGAGGAAGAATGGTTAGGAATTCAGAGATTGGCTATGAGGTTCATAAATTATGCAGCCAAGTAAAACTGCCGGAGGGCAAG CTTGCAGATTCTAGTGGAGTTGGTATACAAATGGCCAAGCTGTCATCAAATGCTTTTGTTCGCAAGCTTCTTGCTCCATCACCTGCTGTAATGCCATTGC AACTCCCCTATGATTCCATGGAACCAAACTCAGTTGCAAACTGGTTAGAGTGCTGGTCAGCGTCCTCTTTCTGGAAACCAGTTCCCCAACCAAAAAAAAT TACTTGCTCAAAAACTCAGAGAAAGCAGAGTAATGGTCAAATAGTGGAAGCTGAAACTGGTAGGCCAAAGCGCAGTGTTCGGAGGGTCCCTGCTGCAAAT GTTGACAGTACCTCAGTACAAGCAGCCTCTGAATTTGAGAAACCCAAGCGCAATTTGAGGAAAGTTTCAAGCCATCCAGCTGATTCAGCAGAAAATTCAC AGATTGAGCTTGAAAAGGTAAAGCGCAGCTTAAGAAAGGTTAATAACCCCGTTATAGAAAACTCTGCTCATTCAGAGGTTGAAAATGAAAAGCCAAAGCA AGGTCTAGAAAAGGTATCTGGCACTTCAGGTGATAATGTTTTGGGATGGAGCGTAAGTAATTCAGCTGAGAAGATGAAGAAAGAAGCTACCTTGACAACA TCCAATGTACCTGATGTGGTGAAGAATGATCCAAACTTGATGTCCAAGTTGCCTGATGCAGAGACAGCTGATGAACCTGTAGAAATGATCAAGACATTGG AATCATCACATGACGATCAAGCTGTGGTAGAATCTAAAGCTTCAGTAGATACTGGTGGTATAGTTGAGAATATGCAAATAAATGGGAAGTCCAAACACCA GGATGATCCAACAAGCAATGAAAATCACAAAACTGCCAAGAAACCTTCATTCACAATGAAACCAGAACGTGCCGAGAATGGGCTACAGAGCAGTCCCACC CTCCCTAGCTACATGGCAGCAACTGAATCTGCAAAGGCAAAGCTGAGAATGCAAGGCTCCCCAAGATTTAGTGAAGATCGAGTTGAGAAAAATAACATCA CCCGTCGTCATTCTCTGCCCTCTTCAACTAATAGCAAAATCAGCTCCGAGTCCCCGAGGACACAAAGAGCAGTTCATGGTAGTGGCAAAGGGGGGAATAA GAGTGACAAGTCTTTATTGTCTTCAAGAGATGGAAATGCTAAGGGAGCCCAACCAGAGTGGAAGAGGTAA
AA sequence Show only first row Show all	>Potri.012G069900.2 pacid=42783300 polypeptide=Potri.012G069900.2.p locus=Potri.012G069900 ID=Potri.012G069900.2.v4.1 annot-version=v4.1 MGRKSPAKWIKTVLFGKKSSKSLIVKGRERTVNDKETLVAVRAVEADVTSVPPVVKPTAPTTTNITERMLELESRETTESSRDGGILSTGNQDANHSQLY TPDAPPSDADKIRLDEAATMAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCVLGVVKLQALARGRMVRNSEIGYEVHKLCSQVKLPEGK LADSSGVGIQMAKLSSNAFVRKLLAPSPAVMPLQLPYDSMEPNSVANWLECWSASSFWKPVPQPKKITCSKTQRKQSNGQIVEAETGRPKRSVRRVPAAN VDSTSVQAASEFEKPKRNLRKVSSHPADSAENSQIELEKVKRSLRKVNNPVIENSAHSEVENEKPKQGLEKVSGTSGDNVLGWSVSNSAEKMKKEATLTT SNVPDVVKNDPNLMSKLPDAETADEPVEMIKTLESSHDDQAVVESKASVDTGGIVENMQINGKSKHQDDPTSNENHKTAKKPSFTMKPERAENGLQSSPT LPSYMAATESAKAKLRMQGSPRFSEDRVEKNNITRRHSLPSSTNSKISSESPRTQRAVHGSGKGGNKSDKSLLSSRDGNAKGAQPEWKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.012G069900 [exp]	0	1
AT2G42040			unknown protein		Potri.006G193500 [exp]	2.00	0.9171
AT2G47500			P-loop nucleoside triphosphate...		Potri.014G125700 [exp]	2.00	0.9224
AT2G37195			unknown protein		Potri.016G090000 [exp]	3.16	0.9121
AT5G02440			unknown protein		Potri.009G030100 [exp]	4.58	0.9115
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.012G090800 [exp]	4.89	0.9112
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.016G097800 [exp]	7.34	0.9121	ALPHA.3
AT1G62045			unknown protein		Potri.004G013601 [exp]	7.34	0.9099
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.011G068800 [exp]	7.41	0.9066
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	7.54	0.8999
AT5G57330			Galactose mutarotase-like supe...		Potri.006G165400 [exp]	7.74	0.9031

Compare expression of checked genes

Potri.012G069900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.