Plant FIBer expression Database

Potri.012G070000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G18870 627 / 0 ATICS2, ICS2 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
AT1G74710 622 / 0 ATICS1, SID2, EDS16, ICS1 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2)
AT1G68890 100 / 1e-21 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
AT2G29690 63 / 3e-10 ATHANSYNAB, ASA2 anthranilate synthase 2 (.1)
AT2G28880 57 / 4e-08 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G135500
[exp]
91 / 8e-19 AT1G68890 1931 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Potri.010G221500
[exp]
64 / 2e-10 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023622
[exp]
708 / 0 AT1G74710 623 / 0.0 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2)
Lus10024255
[exp]
506 / 1e-175 AT1G18870 459 / 2e-158 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
Lus10030915
[exp]
70 / 5e-12 AT1G68890 1693 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Lus10036525
[exp]
62 / 8e-10 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1)
Lus10041403
[exp]
62 / 1e-09 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00425 Chorismate_bind chorismate binding enzyme
Representative CDS sequence
>Potri.012G070000.1 pacid=42783887 polypeptide=Potri.012G070000.1.p locus=Potri.012G070000 ID=Potri.012G070000.1.v4.1 annot-version=v4.1
ATGGCAACCGCTACTATAGCACATTTTATGGATTTGGAATCAATTAAGTACAGTATCGCAGCCCAACCAGTTTCCAGAAGGCAATCTCTTCATCTTTTCT
ACCACAGATGCTATTATCACAAGCCATGTTCAGTGGTTGTATCCATGAATGGCTGCCAAGGAAACCCCAGAGACAGAGTCCCTATTGGCAGCATCGAGAC
TCGTACATTTCCAGCAGTTACATCTCCTGCTTTGGCTACGGACACCCTCAATTTGGCGATTTCTGAATTGAAAGCCAATCCTCCTCTTTTCACTTCAGGA
ATCTTACGTCTCCAGGTGCCAATCCAACAGCAAATTGAAGCAATTGATTGGCTACACTCTCAGCACCAGATTCATCCACGCTGTTTCTTCTCTGGTCGAA
GACAAAGCAAAGATTTCACGGAGGTAACCAACGGAAATGGCTATCAAAAGTCCAATAATGTGGTCAGTGTGGCTGGTGTGGGCTCTGCTGTCCTTTTCAG
GGATGTCCATCCATTTTGTTACAATGACTGGAAGTCCATAAAGAGGTTCCTCTCTGCCAATTGTCCACTGATTCGTGCTTATGGAGCTATCCGCTTTGAT
GCAAGGGCTAACATATCATCTGAATGGGAACCTTTTGGCTCATTTTACTTCGTTATCCCTCAGGTTGAGTTGGACGAGCTAGATGGGTGTTCCATGCTCG
CCACAACTATTGCATGGGATAATGCATTTTCATGGACATGGGAACAGGCTGTGGATGCTGTTGAAGCTACCATGACTCAGATCTCTTCAAATGTGTTAAA
GTTAAGTAAAGAAGTAACTAGATCATTCATTTTAAGCAATAGTCACGTTCCCTGCAAGATGTACTGGGATCTTGCTGTTGAGAGAGCTTTGCAAATCATC
AATCGAAGCAGCTCACCACTTACTAAGGTTGTACTCGCACGTAGTAGCAAATTTGTAATTGGTAATGACATCGATCCTATAGCATGGTTGGCTTGCCTGC
AGGTTGAAGGGGAAAATGCTTATCAATTTTGTCTTCAGCCGCCCAATGCCCCTGCATTTATTGGGAACACGCCAGAGCAACTATTTCACAGAAATTGCCT
GGGAATAAGTAGTGAGGCTATGGCTGGAACCCGTGCTCGAGGTGGATCCATGGCTTTAGATCTTCAAATACAACTTGATTTACTTTCCAGTCCCAAGGAC
CACCTCGAGTTTACGATAGTACGAGATAACATAAGAAAAAAATTAGAGGCTGTATGTGACAGGATAGTTGTTGAACCAAACAAAGCTATAAGAAAATTCC
ATAGAGTTCAACACTTGTATGCACGATTGGCAGGCGAGTTAAGAAGCGAAGATGATGAGTTTAAAATCCTGTCGTCTCTTCACCCTACTCCAGCAGTTTG
TGGATTTCCAACAGAAGAGGCTCGACTTTTAATCGCAGAAACTGAAGTATTTGATCGAGGGATGTATGCTGGGCCTGTTGGTTGGTTTGGAGGAGGAGAA
AGTGAGTTTGCTGTTGGCATTAGATCAGCATTGGTAGAAAAGGGTCTTGGTGCATTGATCTATGCCGGGACAGGGATAGTTAAAGGAAGCAACCCATCTT
TGGAATGGGATGAACTGGAATTAAAGACATCTCAGTTTACCAAGCTGCTTAAACTTGAGGGTCCATCAAGACAAAAAATAGAGAACTCAGGAATCATCAA
CTGA
AA sequence
>Potri.012G070000.1 pacid=42783887 polypeptide=Potri.012G070000.1.p locus=Potri.012G070000 ID=Potri.012G070000.1.v4.1 annot-version=v4.1
MATATIAHFMDLESIKYSIAAQPVSRRQSLHLFYHRCYYHKPCSVVVSMNGCQGNPRDRVPIGSIETRTFPAVTSPALATDTLNLAISELKANPPLFTSG
ILRLQVPIQQQIEAIDWLHSQHQIHPRCFFSGRRQSKDFTEVTNGNGYQKSNNVVSVAGVGSAVLFRDVHPFCYNDWKSIKRFLSANCPLIRAYGAIRFD
ARANISSEWEPFGSFYFVIPQVELDELDGCSMLATTIAWDNAFSWTWEQAVDAVEATMTQISSNVLKLSKEVTRSFILSNSHVPCKMYWDLAVERALQII
NRSSSPLTKVVLARSSKFVIGNDIDPIAWLACLQVEGENAYQFCLQPPNAPAFIGNTPEQLFHRNCLGISSEAMAGTRARGGSMALDLQIQLDLLSSPKD
HLEFTIVRDNIRKKLEAVCDRIVVEPNKAIRKFHRVQHLYARLAGELRSEDDEFKILSSLHPTPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFGGGE
SEFAVGIRSALVEKGLGALIYAGTGIVKGSNPSLEWDELELKTSQFTKLLKLEGPSRQKIENSGIIN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G18870 ATICS2, ICS2 ARABIDOPSIS ISOCHORISMATE SYNT... Potri.012G070000
[exp]
0 1
AT2G20180 bHLH PIF1, PIL5, bHL... PHY-INTERACTING FACTOR 1, phyt... Potri.002G252800
[exp]
1.00 0.9204 Pt-PIL5.1
AT1G30520 AAE14 acyl-activating enzyme 14 (.1) Potri.011G164100
[exp]
3.60 0.8764
AT1G75500 WAT1 Walls Are Thin 1 (.1.2) Potri.007G017800
[exp]
3.87 0.8975
AT4G33580 ATBCA5 A. THALIANA BETA CARBONIC ANHY... Potri.005G156600
[exp]
4.00 0.8849
Potri.003G044301
[exp]
4.47 0.8826
AT4G21120 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTE... Potri.015G133100
[exp]
6.32 0.8994 AAT1.2,PtrCAT12
AT3G45780 RPT1, NPH1, JK2... ROOT PHOTOTROPISM 1, NONPHOTOT... Potri.001G342000
[exp]
6.70 0.8832 Pt-PHOT1.1
AT4G19160 unknown protein Potri.001G193400
[exp]
7.41 0.8921
AT4G35440 CLCE, ATCLC-E, ... chloride channel E (.1.2) Potri.004G209900
[exp]
10.09 0.8915
AT4G31780 UGT81A1, EMB279... UDP-glycosyl transferase 81A1,... Potri.018G016600
[exp]
12.00 0.8392

Potri.012G070000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.