Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69850 687 / 0 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G27040 650 / 0 Major facilitator superfamily protein (.1.2) AT5G62730 647 / 0 Major facilitator superfamily protein (.1) AT3G25260 330 / 1e-106 Major facilitator superfamily protein (.1) AT1G59740 332 / 2e-106 Major facilitator superfamily protein (.1) AT1G33440 327 / 2e-104 Major facilitator superfamily protein (.1) AT3G25280 324 / 3e-104 Major facilitator superfamily protein (.1) AT2G02040 308 / 2e-97 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G12110 302 / 5e-95 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT3G54140 295 / 1e-92 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034300 [exp] 725 / 0 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.004G064100 [exp] 399 / 3e-132 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.014G036200 [exp] 380 / 6e-125 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.002G129500 [exp] 379 / 7e-125 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.002G249100 [exp] 364 / 1e-119 AT3G25280 498 / 7e-173 Major facilitator superfamily protein (.1) Potri.004G229000 [exp] 338 / 1e-108 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 332 / 5e-106 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 330 / 2e-105 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 316 / 2e-100 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033101 [exp] 766 / 0 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10036710 [exp] 671 / 0 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 670 / 0 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 658 / 0 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 650 / 0 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10025881 [exp] 373 / 5e-123 AT3G25280 558 / 0.0 Major facilitator superfamily protein (.1) Lus10015240 [exp] 374 / 2e-122 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10006477 [exp] 356 / 8e-116 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10005417 [exp] 355 / 2e-115 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10032876 [exp] 353 / 1e-114 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.012G070700.1 pacid=42783524 polypeptide=Potri.012G070700.1.p locus=Potri.012G070700 ID=Potri.012G070700.1.v4.1 annot-version=v4.1 ATGGATGAAGCACACATGTTGAATACTTGTGAAGGTTACGTAGACTGGAGGAACAGACCTGCCGTGAGAGGTCGGCATGGTGGAATACTTGCTGCCTCCT TTGTCTTGGTTGTGGAGGTTCTGGAGAATCTAGCATTCCTGGCCAATGCAAGCAACCTTGTTCTTTACCTCTCCATGTACATGCATTTTTCCCCATCCAG CTCGGCCAACGTTGTTACCAATTTCATGGGCACAGCCTTTCTCCTTGCTCTACTTGGTGGCTTTCTAGCAGATGCTTTTTTTACCACCTATTACATCTAT TTGATCAGTGCTTCAATAGAATCCCTGGGTATGTTAGTGCTTACAATTCAAGCTCGTGTAACCTCGTTGAAACCACCACCATGCTTTTCAGCGAGCACCA GTATCTCATGCGAGCAAGTTGATGGCAGGAAAGCATTGATGTTGTTCGCAGGCCTCTACCTGGTGGCACTCGGTGTTGGAGGGATAAAGGGTTCTCTTCC CCCACATGGCGCTGAGCAGTTTGATGAGAATACTCTTCAAGGAAGAAAGCAGAGATCTGCATTCTTTAACTACTATGTATTCTGCCTTTCCTGTGGAGCT TTGATTGCAGTGACTCTAGTGGTATGGGTTGAGGACAACAAAGGATGGCAATGGGGATTTGGGGTTTCCACTGCAACTATACTTCTCTCTATCCCAATCT TCCTCATCGGCTCCCCAGTCTATAGGACCAAAGTTCCTATAGGAAGTCCCATCACAACTATATTCAAGGTTCTCGCTGCAGCGGTTTACAGCACCTACAA ATTCAGGGATTCTAGCAATTCTGCCATTGGAATGGACACAAGCAGGACATCCTATACCACAGAAACCAGTGAGGGAGAAGATAGAAATACGAAACGAAAG GAACTAAGTCAAACTCCAACAGAAAGCCTCGAGTTTGTTAACAGAGCAGTCAAGAACAAGACAGTCAATCCAATGCTAGAATGTACAGCTGAGCAGGTGG AAGAAGTTAAGATAGTGCTAAGAATCCTCCCCATCTTCATGTCTACTATAATGCTAAACTGTTGCCTGGCTCAGCTTTCCACATTTTCTGTCCAGCAAGC ATCGACCATGAATACCAATCTTGGCTCCTTAAAAGTCCCACCAGCATCTCTTCCTGTTTTCCCTGTTATATTCATCATGATCCTGGCACCAATCTATAAC CACATCATCATTCCATTTGCGAGGAAAGTGACAAAATCCGAAATGGGGATAACTCATTTGCAAAGAATAGGGACAGGGCTAGTCCTATCCGTCGTGGCAA TGGTAGTGGCAGCCCTGGTGGAAATGAAGCGAAAGAGAGTAGCAGCCAATTCTGGATTAGTAAATTCAACAAAACCTCTACCCATCACATTCCTTTGGAT CGCATTGCAGTACTTGTTCCTGGGATCAGCTGATCTTTTCACATTAGCGGGCATGATGGAATTCTTCTTCACAGAGGCCCCAAAAAGCATGAGATCTTTG GCCACATCTCTATCATGGGCCTCACTAGCCATGGGATACTACCTCAGTTCTGTGCTTGTATCTCTGATCAACACAATCACAGGTAGGTACCGAGACACGC CATGGCTCTTTGGTAGCAACTTGAACAAGTATCGCCTGGAGAGGTTTTACTGGTTGATGTGCATACTAAGTGGATTAAACTTGTCTCATTATCTCTTCTG GGCAAGCCGCTACAAGTACAAGTCCATGAGAAAATCCCTTTCTCAGCCTAACAATTAG
AA sequence Show only first row Show all	>Potri.012G070700.1 pacid=42783524 polypeptide=Potri.012G070700.1.p locus=Potri.012G070700 ID=Potri.012G070700.1.v4.1 annot-version=v4.1 MDEAHMLNTCEGYVDWRNRPAVRGRHGGILAASFVLVVEVLENLAFLANASNLVLYLSMYMHFSPSSSANVVTNFMGTAFLLALLGGFLADAFFTTYYIY LISASIESLGMLVLTIQARVTSLKPPPCFSASTSISCEQVDGRKALMLFAGLYLVALGVGGIKGSLPPHGAEQFDENTLQGRKQRSAFFNYYVFCLSCGA LIAVTLVVWVEDNKGWQWGFGVSTATILLSIPIFLIGSPVYRTKVPIGSPITTIFKVLAAAVYSTYKFRDSSNSAIGMDTSRTSYTTETSEGEDRNTKRK ELSQTPTESLEFVNRAVKNKTVNPMLECTAEQVEEVKIVLRILPIFMSTIMLNCCLAQLSTFSVQQASTMNTNLGSLKVPPASLPVFPVIFIMILAPIYN HIIIPFARKVTKSEMGITHLQRIGTGLVLSVVAMVVAALVEMKRKRVAANSGLVNSTKPLPITFLWIALQYLFLGSADLFTLAGMMEFFFTEAPKSMRSL ATSLSWASLAMGYYLSSVLVSLINTITGRYRDTPWLFGSNLNKYRLERFYWLMCILSGLNLSHYLFWASRYKYKSMRKSLSQPNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Potri.012G070700 [exp]	0	1
					Potri.014G124700 [exp]	4.24	0.9469
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124128 [exp]	4.35	0.9724
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124156 [exp]	7.61	0.9640
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124300 [exp]	23.15	0.9525
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.008G186601 [exp]	27.82	0.9415
AT2G46735			unknown protein		Potri.002G178100 [exp]	30.98	0.9383
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Potri.001G186800 [exp]	30.98	0.9412
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124184 [exp]	33.77	0.9454
					Potri.002G064950 [exp]	35.07	0.8768
AT5G20935			unknown protein		Potri.009G155300 [exp]	36.00	0.9436

Compare expression of checked genes

Potri.012G070700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.