Plant FIBer expression Database

Potri.012G070801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G070801.5 pacid=42782868 polypeptide=Potri.012G070801.5.p locus=Potri.012G070801 ID=Potri.012G070801.5.v4.1 annot-version=v4.1
ATGCCACTTTCTCTCTGTTTTTCCCCCCTGCCTTTGCATCTCTGTTTTCTATCTTTTTCTCAATGGTCCAGCTGTGGTTGGAATCCTGTTAATGTTGTCT
GTTTCTCTGTCTTTTATTCTCTGTGGCAAACGCCTTATGCTCTACGGTTTAGAATGCTCTTTGTTGCTCTATTTGTGACATTGTCATTGCAGTCTTTGTG
TTACAGGCATGCATGCATGCCTGTTATTTGCTTTAGGCAGGGTGATGTGTTTCATATGGAGGTTGATTATGCAGGTCTGGCTCTGCAATTGAATGGGGAC
TCTGTGCTTTTATGGTTGCAAAACACCTTCAGTGTGCCATCACCATCAAGTTTGGATGAACCAGCCATACCAGCTCAATGTCAACGTCTCTCGCCTTCCG
CGCACACGCGGATCATTCTTCGCCATGTGTTCTCTCCATGA
AA sequence
>Potri.012G070801.5 pacid=42782868 polypeptide=Potri.012G070801.5.p locus=Potri.012G070801 ID=Potri.012G070801.5.v4.1 annot-version=v4.1
MPLSLCFSPLPLHLCFLSFSQWSSCGWNPVNVVCFSVFYSLWQTPYALRFRMLFVALFVTLSLQSLCYRHACMPVICFRQGDVFHMEVDYAGLALQLNGD
SVLLWLQNTFSVPSPSSLDEPAIPAQCQRLSPSAHTRIILRHVFSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G070801
[exp]
0 1
Potri.006G181966
[exp]
11.83 0.7314
AT5G26720 unknown protein Potri.005G001100
[exp]
14.49 0.6331
AT4G36870 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodom... Potri.007G032700
[exp]
15.49 0.6374
AT3G03160 unknown protein Potri.015G035400
[exp]
17.66 0.6199
AT5G03250 Phototropic-responsive NPH3 fa... Potri.016G090400
[exp]
20.24 0.6225
AT4G39140 RING/U-box superfamily protein... Potri.004G158400
[exp]
26.83 0.6048
AT5G46940 Plant invertase/pectin methyle... Potri.014G044100
[exp]
30.41 0.6343
AT1G78950 ATLUP3 Terpenoid cyclases family prot... Potri.007G002500
[exp]
56.83 0.5434
AT2G37750 unknown protein Potri.016G101900
[exp]
61.50 0.6176
AT3G55550 Concanavalin A-like lectin pro... Potri.010G200600
[exp]
71.84 0.5933

Potri.012G070801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.