Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01470 145 / 2e-41 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G69780 134 / 4e-37 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT4G40060 134 / 6e-37 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 134 / 8e-37 HD ATHB6 homeobox protein 6 (.1) AT5G15150 132 / 3e-36 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT5G65310 131 / 1e-35 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT3G01220 128 / 9e-35 HD ATHB20 homeobox protein 20 (.1) AT1G27045 113 / 8e-30 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1) AT1G26960 112 / 3e-29 HD ATHB23 homeobox protein 23 (.1) AT2G46680 111 / 7e-29 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065400 [exp] 506 / 0 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.008G194400 [exp] 209 / 1e-65 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.005G071900 [exp] 139 / 1e-38 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.017G081700 [exp] 137 / 3e-38 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.010G093400 [exp] 136 / 1e-37 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.007G097100 [exp] 136 / 2e-37 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.002G100600 [exp] 133 / 7e-37 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.008G148200 [exp] 130 / 8e-36 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.005G161500 [exp] 126 / 3e-34 AT4G40060 187 / 4e-58 homeobox protein 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004270 [exp] 323 / 2e-110 AT3G01470 152 / 5e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 320 / 2e-109 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 258 / 6e-85 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 253 / 4e-83 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037218 [exp] 153 / 2e-44 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036709 [exp] 152 / 7e-44 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 147 / 3e-42 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 146 / 1e-41 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030800 [exp] 141 / 4e-40 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10013277 [exp] 141 / 6e-40 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.012G070900.1 pacid=42783620 polypeptide=Potri.012G070900.1.p locus=Potri.012G070900 ID=Potri.012G070900.1.v4.1 annot-version=v4.1 ATGGCGGCTTGTGGTGGTGGTGGTGGTGGTTCTAATCCCAATTTGTCTGTTTTAGTTCAAAGCCAAAGAGGCCCTTGTGCTGCTTCTCAACCTCTTGAAG CTTTTTTCCTTTCTGGCTCTTCTCCTTCTTTTCTTGGTTCAAGATCCATGATGAGTTTTGCAGATGTTCACCAAGCAAATGGATCAACTAGACCGTTTTT CCGCCCATATGAACACGAAGACAACGGCGACGATGATTTGGATGAATATTTTCATCAACCTGAAAAGAAGAGGAGACTTACTGTTGATCAAGTTCAGTTT CTTGAAAGAAGTTTTGAGGTTGAGAACAAGCTTGAACCCGAAAGGAAAATCCAGCTGGCGAAGGATCTTGGCTTGCAGCCTCGGCAGGTTGCCATATGGT TTCAAAACCGCCGGGCAAGATGGAAGACGAAACAGCTTGAAAAAGATTATGAGGTTCTGCAATCTAGCTACAATGGCCTTAAGGCTGACTACGACAACCT CTTCAAGGAGAAGGAGAAACTAAAAGCTGAGGTTAATCTTCTCACCAACGAGTTGCTCCTTAAAGAGAAAGAGAAAGGAAGCTCAGAATTGTCTGATAAA GATGCATTATCTCAAGAGCCACCCAAAAAGGCAATAGCCGATTCAGCTTCAGAGGGTGAAGTGTCGAAAACTTCAACCGTGGCCTGCCAGCAGGAAGATA TTAGCTCAGCCAAAAGTGATATGTTTGATTCAGACAGCCCACATTTTGCGGATGGGGTACATTCCTCACTCTTAGAGGCAGGTGATTCTTCACATGTCTT CGAGCCCGACCAATCGGATTTATCACAAGATGAAGAAGATAACTTGAGCAAGAGTCTTTTGCCTCCGTACGTCTTTCCAAAGCTTGAAGATGGTGATTAC TCTGACCCGCCAGCAAGTTTTGAAGATCATGCCTTTTGGTGCTGGTCATACTAA
AA sequence Show only first row Show all	>Potri.012G070900.1 pacid=42783620 polypeptide=Potri.012G070900.1.p locus=Potri.012G070900 ID=Potri.012G070900.1.v4.1 annot-version=v4.1 MAACGGGGGGSNPNLSVLVQSQRGPCAASQPLEAFFLSGSSPSFLGSRSMMSFADVHQANGSTRPFFRPYEHEDNGDDDLDEYFHQPEKKRRLTVDQVQF LERSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEVLQSSYNGLKADYDNLFKEKEKLKAEVNLLTNELLLKEKEKGSSELSDK DALSQEPPKKAIADSASEGEVSKTSTVACQQEDISSAKSDMFDSDSPHFADGVHSSLLEAGDSSHVFEPDQSDLSQDEEDNLSKSLLPPYVFPKLEDGDY SDPPASFEDHAFWCWSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.012G070900 [exp]	0	1
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Potri.005G084800 [exp]	1.00	0.9239	GCN2.2
AT1G46768	AP2_ERF	RAP2.1	related to AP2 1 (.1)		Potri.014G025200 [exp]	2.44	0.9130	DREB36,DREB1.2
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Potri.008G064400 [exp]	3.46	0.8987	COI1.2
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.006G039000 [exp]	7.93	0.8967
AT3G49055			unknown protein		Potri.015G146100 [exp]	8.00	0.8960
AT4G26470			Calcium-binding EF-hand family...		Potri.001G471100 [exp]	9.59	0.8608
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.006G133000 [exp]	9.79	0.9025
AT1G18265			Protein of unknown function, D...		Potri.009G078800 [exp]	11.31	0.8999
AT3G10760	GARP		Homeodomain-like superfamily p...		Potri.006G034900 [exp]	13.41	0.8678
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.003G049100 [exp]	16.15	0.8933

Compare expression of checked genes

Potri.012G070900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.