Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62710 943 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G31420 586 / 0 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 558 / 0 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT5G45780 324 / 5e-103 Leucine-rich repeat protein kinase family protein (.1) AT1G60800 325 / 8e-103 NIK3 NSP-interacting kinase 3 (.1) AT5G07280 333 / 2e-101 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G25560 313 / 2e-98 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G23950 311 / 9e-98 Leucine-rich repeat protein kinase family protein (.1) AT5G63710 310 / 1e-97 Leucine-rich repeat protein kinase family protein (.1) AT5G65240 310 / 2e-97 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G129000 [exp] 600 / 0 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G105000 [exp] 592 / 0 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.005G083300 [exp] 357 / 2e-115 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 351 / 5e-113 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.007G094500 [exp] 331 / 1e-105 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.011G068700 [exp] 327 / 4e-104 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G059100 [exp] 324 / 9e-103 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G108000 [exp] 321 / 2e-101 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.001G380800 [exp] 312 / 2e-101 AT1G78530 535 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033104 [exp] 1006 / 0 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 995 / 0 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034753 [exp] 588 / 0 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033291 [exp] 496 / 2e-164 AT1G31420 769 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10030591 [exp] 334 / 2e-106 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10030898 [exp] 333 / 4e-106 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10007292 [exp] 329 / 6e-105 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019963 [exp] 318 / 1e-99 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029241 [exp] 314 / 2e-99 AT5G45780 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 312 / 7e-98 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G071100.1 pacid=42784321 polypeptide=Potri.012G071100.1.p locus=Potri.012G071100 ID=Potri.012G071100.1.v4.1 annot-version=v4.1 ATGAAAATGGTTTTGCTTCTTTGGATCTTTTCAGTGATTTCTTCTGTGACCCTTTTGAGTACTTGCTCCCTTGCTCTCTCTGAAGATGGACTGACATTGT TAGAGATCATGAGTACATGGAATGATAGTAGAAACATCCTTACCAATTGGCAAGCTACTGATGAATCTCCCTGCAAATGGACTGGTATTTCTTGTCATCC CCAAGACCAAAGGGTCACCTCAATAAACTTGCCTTACATGGAATTGGGAGGGATTATATCTCCCAGCATTGGTAAACTCAGTAGATTACAAAGATTGGCG CTTCACCAGAACAGCTTACATGGAATTATTCCTTATGAAATTAGTAATTGTACTGAGCTGAGGGCCATTTACTTGATGGCTAATTATCTCCAAGGAGGAA TACCAGCAGATATTGGAAACCTTTCCCACCTCAATATCCTGGATTTATCAAGCAATTTGCTAAAGGGTGCCATACCTTCATCTATTGGCCGCCTTACACG CTTGCGCCACCTGAACTTGTCTACCAACTCTTTCTCAGGTGAAATCCCTGATTTTGGATCTCTTTCTACTTTTGGGAACAATTCGTTTATTGGCAACTCG GATCTTTGTGGTAGACAAGTGCACAAGCCATGTCGAACCTCTTTGGGATTCCCTGCAGTTTTACCTCATGCAGCAAGTGATGAAGCAGCAGTTCCTCCAA AACGATCCTCTCATTACATCAAAGGGTTGCTAATTGGTGTAATGTCAACTATGGCCATTACACTCCTTGTGCTCCTTATATTCCTTTGGATTTGCTTGGT ATCAAAGAAGGAAAGAGCTGCCAAGAAATACACAGAAGTTAAAAAGCAAGTTGATCAAGAAGCAAGTGCAAAGCTCATTACTTTTCATGGTGACCTGCCA TATCATTCCTGTGAGATCATTGAAAAGCTGGAGTCTCTTGATGAAGAGGATATTGTAGGTTCAGGAGGCTTTGGTACTGTCTTCCGTATGGTCATGAATG ATTGTGGCACATTTGCTGTTAAAAGAATTGATCGCAGTCGGGAAGGATCTGATCAAGTTTTTGAGAGGGAATTGGAGATTTTGGGGAGCATCAACCACAT AAATTTGGTAAACCTGAGAGGCTACTGCAGGCTTCCAATGTCAAAGCTTCTTATCTATGATTACCTGGCCATGGGCAGTTTAGATGACTTTTTGCATGAA CATGGCCAAGAAGAACGACTGTTAAACTGGAGTGCTCGTTTAAGAATAGCACTAGGTTCTGCTCGGGGGCTTGCATACTTGCACCATGACTGTTGTCCGA AGATAGTTCATCGTGACATAAAATCCAGCAATATTCTCCTTGACGAAAATTTGGAGCCCCATGTATCTGATTTTGGTCTAGCAAAACTTTTGGTAGATGA GGATGCCCATGTCACGACTGTAGTGGCTGGCACTTTTGGTTATTTGGCACCAGAGTATCTGCAGAGTGGGATAGCTACCGAGAAATCAGATGTCTATAGC TTTGGAGTTCTCTTGCTAGAGCTTGTAACTGGAAAAAGACCAACTGATCCAGCTTTTGTAAAGAGAGGCTTAAATGTTGTTGGTTGGATGAACACCCTAT TGAGAGAGAACAGGTTGGAAGATGTAGTGGATACAAGGTGCAAAGATACAGATATGGAAACTCTGGAGGTAATTCTTGAGATAGCAACAAGGTGCACGGA TGCAAACCCGGATGATCGGCCAACAATGAACCAAGCATTGCAGTTACTAGAACAAGAAGTCATGTCTCCTTGCCCGAGTGATTTCTACGAGTCCCATTCA GATTATTGTTAA
AA sequence Show only first row Show all	>Potri.012G071100.1 pacid=42784321 polypeptide=Potri.012G071100.1.p locus=Potri.012G071100 ID=Potri.012G071100.1.v4.1 annot-version=v4.1 MKMVLLLWIFSVISSVTLLSTCSLALSEDGLTLLEIMSTWNDSRNILTNWQATDESPCKWTGISCHPQDQRVTSINLPYMELGGIISPSIGKLSRLQRLA LHQNSLHGIIPYEISNCTELRAIYLMANYLQGGIPADIGNLSHLNILDLSSNLLKGAIPSSIGRLTRLRHLNLSTNSFSGEIPDFGSLSTFGNNSFIGNS DLCGRQVHKPCRTSLGFPAVLPHAASDEAAVPPKRSSHYIKGLLIGVMSTMAITLLVLLIFLWICLVSKKERAAKKYTEVKKQVDQEASAKLITFHGDLP YHSCEIIEKLESLDEEDIVGSGGFGTVFRMVMNDCGTFAVKRIDRSREGSDQVFERELEILGSINHINLVNLRGYCRLPMSKLLIYDYLAMGSLDDFLHE HGQEERLLNWSARLRIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGIATEKSDVYS FGVLLLELVTGKRPTDPAFVKRGLNVVGWMNTLLRENRLEDVVDTRCKDTDMETLEVILEIATRCTDANPDDRPTMNQALQLLEQEVMSPCPSDFYESHS DYC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62710			Leucine-rich repeat protein ki...		Potri.012G071100 [exp]	0	1
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.001G241300 [exp]	1.00	0.9572
AT5G56890			Protein kinase superfamily pro...		Potri.006G152000 [exp]	2.00	0.9294
AT3G56750			unknown protein		Potri.006G040400 [exp]	2.44	0.9288
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	2.82	0.9285
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.012G105500 [exp]	5.29	0.9180
AT5G26330			Cupredoxin superfamily protein...		Potri.008G151000 [exp]	6.00	0.9032
AT5G26330			Cupredoxin superfamily protein...		Potri.010G089900 [exp]	6.70	0.9239
AT5G04310			Pectin lyase-like superfamily ...		Potri.008G032700 [exp]	7.61	0.8829
AT2G41830			Uncharacterized protein (.1)		Potri.006G052100 [exp]	8.66	0.8947
AT3G56370			Leucine-rich repeat protein ki...		Potri.016G137000 [exp]	8.83	0.9199

Compare expression of checked genes

Potri.012G071100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.