Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05160 181 / 3e-52 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 181 / 4e-52 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT5G45340 162 / 2e-45 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G36380 150 / 1e-40 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT4G19230 149 / 2e-40 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G05690 146 / 6e-40 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G50660 148 / 9e-40 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT2G29090 143 / 3e-38 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G38970 140 / 1e-37 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT3G13730 140 / 3e-37 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071300 [exp] 712 / 0 AT1G05160 285 / 9e-91 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.014G179100 [exp] 204 / 6e-61 AT1G05160 741 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.013G161800 [exp] 196 / 6e-58 AT1G05160 694 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.001G200100 [exp] 168 / 2e-47 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 168 / 2e-47 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.001G341000 [exp] 160 / 1e-44 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.010G189800 [exp] 160 / 2e-44 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.011G001500 [exp] 159 / 8e-44 AT5G36110 331 / 8e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.005G124000 [exp] 158 / 1e-43 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036670 [exp] 501 / 7e-177 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10033105 [exp] 414 / 1e-142 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10036671 [exp] 357 / 2e-120 AT1G05160 284 / 1e-90 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10043357 [exp] 193 / 1e-56 AT2G32440 643 / 0.0 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) Lus10041794 [exp] 160 / 4e-44 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10028345 [exp] 153 / 2e-41 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10035685 [exp] 149 / 2e-40 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10034768 [exp] 148 / 5e-40 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10021725 [exp] 147 / 8e-40 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10042652 [exp] 147 / 2e-39 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.012G071200.2 pacid=42782941 polypeptide=Potri.012G071200.2.p locus=Potri.012G071200 ID=Potri.012G071200.2.v4.1 annot-version=v4.1 ATGGAAATTACAATAGGTGTATTATTAGCCTGCATTATTGGATCCCTGCCGTTGTTGGGTTTACTAACGTGGTGGTGGAACGAGATATGGTACGTTCTCC CTCTGAAATTTCAACTTTCCGGTACTGCTACAAAGTTACCACCTGGCCACCTGGGATTTCCCTTTGTTGGCGAGATGCTTACCTTCCTCTGGTACTTCAA AATTCTTGGCCGCCCAGATGATTTCATCAATTCTAAGAGAAGCTGGTACGGCGACGGAGTAGGATTGTACAGAACCCACCTTTTTGGATCACCGTCAATC ATAGCATGTTTCCCAGCAGTCAGTAAATTCATTTTCCAATCAAATGACATATTTATTTTGAAGTGGCCAAGCGTGGATATTTTAGGCCAGAATTCTTTGG TAGTAGTTCAGGGAGAGGCCCATAAAAGACTTAGAAACCACGTGACTAATGCTATCACTCGGCCAGATGCTCTTTGCCGCATAGCTGCTCTCGTACAGCC GAGGATGGTGGCTGCCCTCCAATCATGGGTCGATAAGCGTAGAATCAATACTTACAAGGAGATTAAAAAGGTAACCTTCGAGAACATTGGGAAATTATTC GTAGGCTTGCAACCGGGACAGCAGTTGGATGCCATAGATGAGTTGTTTAGGGGGTTGGTCCGTGGAGTTAGAGCTTACCCATTGAACATTCCTGGAACTG CCTATCGCCATGCTCTGCAGTGCAAGAAGAAGCTTGACGCAATATTCAGAGGGGAACTTGAGAAGAAGAAAAGGCAACATGAGTCTGAGAAGACAAATGA TCTAATGGATGGACTGAGGCAAATTGAAGACGATGAAGGAAGTCAATTAAGTGATCAAGAGGTGCTAGACAACATAGTTGGCCTTGTTATTGCTGGGTAT GAGTCTACGTCCATTGCTTCAACGTGGGCTATTTACTATCTTGCCAAGTATCCTCATGTCCTTGCAAAGCTACGGGAGGAGAACACTGCTCTATGCAAGA ACAAAAAGCGAGATTTCATTACAAGTGAAGATGTTGCTAAACTCAAGTACACAAACAAGGTGGTGGAAGAAACTATAAGAATGGCCAACATTGCAGCGGT TATTTTAGAATGGCCACCAGAGAAGTTGAGTATAAAGGTTATAAGATACCGAAGAATTGGAAAGTGA
AA sequence Show only first row Show all	>Potri.012G071200.2 pacid=42782941 polypeptide=Potri.012G071200.2.p locus=Potri.012G071200 ID=Potri.012G071200.2.v4.1 annot-version=v4.1 MEITIGVLLACIIGSLPLLGLLTWWWNEIWYVLPLKFQLSGTATKLPPGHLGFPFVGEMLTFLWYFKILGRPDDFINSKRSWYGDGVGLYRTHLFGSPSI IACFPAVSKFIFQSNDIFILKWPSVDILGQNSLVVVQGEAHKRLRNHVTNAITRPDALCRIAALVQPRMVAALQSWVDKRRINTYKEIKKVTFENIGKLF VGLQPGQQLDAIDELFRGLVRGVRAYPLNIPGTAYRHALQCKKKLDAIFRGELEKKKRQHESEKTNDLMDGLRQIEDDEGSQLSDQEVLDNIVGLVIAGY ESTSIASTWAIYYLAKYPHVLAKLREENTALCKNKKRDFITSEDVAKLKYTNKVVEETIRMANIAAVILEWPPEKLSIKVIRYRRIGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071200 [exp]	0	1
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071300 [exp]	1.00	0.9787
AT2G20030			RING/U-box superfamily protein...		Potri.018G042501 [exp]	4.89	0.9710
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.001G069948 [exp]	10.90	0.9492
AT2G03430			Ankyrin repeat family protein ...		Potri.013G062000 [exp]	10.95	0.9463
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G001300 [exp]	11.95	0.9514
AT2G37240			Thioredoxin superfamily protei...		Potri.008G113000 [exp]	13.74	0.9444
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239402 [exp]	14.28	0.9642
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	16.24	0.9603
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G001401 [exp]	16.58	0.9551
AT2G33580			Protein kinase superfamily pro...		Potri.007G032300 [exp]	16.94	0.9608

Compare expression of checked genes

Potri.012G071200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.