Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05160 285 / 9e-91 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 283 / 6e-90 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT5G45340 276 / 1e-87 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 258 / 7e-81 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G29090 248 / 1e-76 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT3G19270 246 / 5e-76 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT5G05690 236 / 5e-72 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 224 / 2e-67 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT5G38970 219 / 1e-65 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT2G42850 218 / 3e-65 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071200 [exp] 712 / 0 AT1G05160 181 / 3e-52 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.014G179100 [exp] 305 / 2e-98 AT1G05160 741 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.013G161800 [exp] 300 / 2e-96 AT1G05160 694 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.014G029100 [exp] 261 / 7e-82 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G235400 [exp] 261 / 7e-82 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.002G126100 [exp] 250 / 1e-77 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.003G038200 [exp] 249 / 5e-77 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.009G033900 [exp] 248 / 1e-76 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.001G341000 [exp] 247 / 3e-76 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036670 [exp] 670 / 0 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10033105 [exp] 566 / 0 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10036671 [exp] 518 / 0 AT1G05160 284 / 1e-90 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10043357 [exp] 279 / 3e-88 AT2G32440 643 / 0.0 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) Lus10042652 [exp] 259 / 1e-80 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10033308 [exp] 258 / 2e-80 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10021725 [exp] 256 / 5e-80 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10035685 [exp] 255 / 1e-79 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10034768 [exp] 253 / 1e-78 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10041794 [exp] 243 / 1e-74 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.012G071300.1 pacid=42783644 polypeptide=Potri.012G071300.1.p locus=Potri.012G071300 ID=Potri.012G071300.1.v4.1 annot-version=v4.1 ATGGAAATTACAATAGGTGTATTATTAGCCTGCATTATTGGATCCCTGCCGTTGTTGGGTTTACTAACGTGGTGGTGTAACGAGATATGGTACGTTCTCC CTCTGAAATTTCAACTTTCCGGTACTGCTACGAAGTTACCACCTGGCCACCTGGGATTTCCCTTTGTTGGCGAGATGCTTACCTTCCTCTGGTACTTCAA AATTCTTGGCCGCCCAGATGATTTCATCAATTCCAAGAGACGCCGGTACGGCGACGGAGTAGGACTGTACAGAACCCACCTTTTTGGAACACCGTCAATT GTAGCATGTTTCCCAGCAGTCAGTAAATTCATTTTCCAATCAAATGACATATTTATTTTGAAGTGGCCAAGCGTGGATATTTTAGGCCAGAAGTCTTTGG TAGTAGCTCAGGGAGAGGTCCATAAAAGACTTAGAAACCACGTTACTAATGCTATCACTCGGCCAGATGCTCTTTGCCGCATAGCTGTTCTCGTACAGCC GAGGTTGGTAGCTGCCCTCCAGTCATGGGTCGATAAGCGTAGAATCAATACTTACAAGGAGATTAAAAAGGTAACCTTCGAGAACATTGGGAAATTATTC GTAGGCTTGCAACCGGGACAGCAGTTGGATGCCATAGATGAGTTGTTTAAGGGGTTGCTCCGTGGAATTAGAGCTTACCCATTGAACATTCCTGGAACTG CCTATCGCCATGCTATGCAGTGCAAGAAGAAGCTTGACGCAATATTCAGAGGGGAACTTGAGAAGAAGAAAAGGCAACACGAGTCTGAGAAGACAAATGA TCTAATGGATGGACTGATGCAAATTGAAGACGATGAAGGAAGTCAATATTTAAGTGATCAAGAGGTGCTAGACAACATTGTTGGCCTTGTTGTTGCTGGG TATGAGTCTACGTCCGTTGCTTCAACGTGGGCTATTTACTATCTTGCTAAGTATCCTCATGTCCTTGCAAAGCTACGGGAGGAGAACACTGCTCTATGCA AGAACAATAAAGGAGATTTCATTACACTCGAAGATGTTGCTAAACTCAAGTACACAAACAAGGTGGTGGAAGAAACTATAAGAATGGCCAACATTGCAGC GTTTATTTTTAGAATGGCCACCAGAGAAGTTGAGTATAAAGGTTATAAGATACCGAAGAATTGGAAAGTGATTGTCTGGGCTCGATACTTCCATACAAAT CCTGAAAATTTTGAGGATCCTATGTGCTTCAACCCAGACAGATGGAATGAACCGGCAAGGCCAGGAACGTATCAAGTTTTTGGTAATGGATCTAGAATCT GTCCAGGAAACAAGCTTGCTCGCCTACAACTGGCACTTTTTTTACATCATTTGTCTATAGGATACAAGTGGGAACTACTTAATCCTGACGCTGACATGAT TTATCTTTCACATCCATTGCCAATTGATGGGGTTGAGATTGTATTCGACAAGATTTAG
AA sequence Show only first row Show all	>Potri.012G071300.1 pacid=42783644 polypeptide=Potri.012G071300.1.p locus=Potri.012G071300 ID=Potri.012G071300.1.v4.1 annot-version=v4.1 MEITIGVLLACIIGSLPLLGLLTWWCNEIWYVLPLKFQLSGTATKLPPGHLGFPFVGEMLTFLWYFKILGRPDDFINSKRRRYGDGVGLYRTHLFGTPSI VACFPAVSKFIFQSNDIFILKWPSVDILGQKSLVVAQGEVHKRLRNHVTNAITRPDALCRIAVLVQPRLVAALQSWVDKRRINTYKEIKKVTFENIGKLF VGLQPGQQLDAIDELFKGLLRGIRAYPLNIPGTAYRHAMQCKKKLDAIFRGELEKKKRQHESEKTNDLMDGLMQIEDDEGSQYLSDQEVLDNIVGLVVAG YESTSVASTWAIYYLAKYPHVLAKLREENTALCKNNKGDFITLEDVAKLKYTNKVVEETIRMANIAAFIFRMATREVEYKGYKIPKNWKVIVWARYFHTN PENFEDPMCFNPDRWNEPARPGTYQVFGNGSRICPGNKLARLQLALFLHHLSIGYKWELLNPDADMIYLSHPLPIDGVEIVFDKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071300 [exp]	0	1
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071200 [exp]	1.00	0.9787
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191500 [exp]	4.24	0.9670
					Potri.019G016100 [exp]	4.89	0.9749
					Potri.001G405600 [exp]	6.63	0.9692
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G228200 [exp]	8.00	0.9652
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	8.36	0.9611
AT5G06070	C2H2ZnF	RAB, RBE	RABBIT EARS, C2H2 and C2HC zin...		Potri.010G199800 [exp]	8.48	0.9627
AT1G03055			unknown protein		Potri.002G046500 [exp]	9.16	0.9654
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Potri.002G007000 [exp]	9.53	0.9616
AT5G05340			Peroxidase superfamily protein...		Potri.016G132800 [exp]	10.95	0.9678	Pt-PRX1.7

Compare expression of checked genes

Potri.012G071300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.