Plant FIBer expression Database

Potri.012G071450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G071450.1 pacid=42784057 polypeptide=Potri.012G071450.1.p locus=Potri.012G071450 ID=Potri.012G071450.1.v4.1 annot-version=v4.1
ATGATTGTGATGAGGGTGACTTCTGTTTCGTTCCTCCTCTCTGCCTCTGTTCTCAAAGAAAGAAAGAAAAGCTCTGGTCCCTATAGTCTCTCTGTTCTTG
CTTTTTTATTATCTCCTCTTCTCTGTGTTCCCTTGGTTGCCCTTGCGTCTGTCGGTTCGGGTCTTCCTTTTTCCTCCTGTCCCCCCAGTTTTTCTTTCCC
CTTTTTTTTCCAGTTTTTCTTCCTTTTCTCCCCCGCGTTCTTTGTTTTCTCTGGCTTTATAGCCACAGAATTCCACCGTTACCAGGTAATAAATCAACTG
TTATTGCAGGAGTAA
AA sequence
>Potri.012G071450.1 pacid=42784057 polypeptide=Potri.012G071450.1.p locus=Potri.012G071450 ID=Potri.012G071450.1.v4.1 annot-version=v4.1
MIVMRVTSVSFLLSASVLKERKKSSGPYSLSVLAFLLSPLLCVPLVALASVGSGLPFSSCPPSFSFPFFFQFFFLFSPAFFVFSGFIATEFHRYQVINQL
LLQE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G071450
[exp]
0 1
AT3G21150 CO EIP6, BBX32 EMF1-Interacting Protein 1, B-... Potri.010G251800
[exp]
1.41 0.9347
AT3G52740 unknown protein Potri.004G203000
[exp]
10.19 0.9261
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.006G174202
[exp]
12.24 0.9226
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.006G172100
[exp]
18.00 0.9205
AT3G44610 Protein kinase superfamily pro... Potri.009G146500
[exp]
19.79 0.9109
AT5G50210 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEAT... Potri.015G085300
[exp]
21.63 0.9108
AT3G56290 unknown protein Potri.019G056400
[exp]
28.16 0.9045
AT5G19875 unknown protein Potri.001G231300
[exp]
28.53 0.9062
AT1G13260 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING ... Potri.015G015650
[exp]
28.84 0.8565
AT1G56600 ATGOLS2 galactinol synthase 2 (.1) Potri.013G005900
[exp]
30.88 0.8982

Potri.012G071450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.