Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HA2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62670 1637 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 1633 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT4G30190 1385 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT5G57350 1382 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT1G80660 1378 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT2G18960 1376 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT3G42640 1376 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G07560 1362 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT2G24520 1349 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT3G60330 1311 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066000 [exp] 1678 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.014G046300 [exp] 1428 / 0 AT3G60330 1462 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Potri.018G090300 [exp] 1415 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 1411 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.006G275000 [exp] 1408 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 1390 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G188600 [exp] 1388 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 1386 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.003G080500 [exp] 1384 / 0 AT5G62670 1379 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003259 [exp] 1648 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1648 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10001631 [exp] 1407 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10024105 [exp] 1393 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026946 [exp] 1377 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10040166 [exp] 1357 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1355 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10028201 [exp] 1274 / 0 AT3G60330 1422 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10026224 [exp] 1268 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10042445 [exp] 1236 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.012G071600.5 pacid=42782589 polypeptide=Potri.012G071600.5.p locus=Potri.012G071600 ID=Potri.012G071600.5.v4.1 annot-version=v4.1 ATGGGAGACAAGGGTGAAGTTTTGGAGGCTGTCTTGAAGGAAACTGTGGATTTGGAGAACATACCCATTGAGGAAGTATTAGAGAATCTGAGATGTAGCA GAGAAGGTCTCACAACTCAGGCTGCTGAGGAGAGGCTAGCCATTTTCGGTCACAACAAGCTTGAAGAGAAGAAGGAGAGAAAATTCTTGAAATTCCTGGG CTTTATGTGGAATCCTCTGTCATGGGTTATGGAGGCTGCTGCTATCATGGCTATTGCTCTTGCAAATGGAGGAGGAAAGCCTCCAGATTGGCAAGACTTT GTGGGTATCATTACTCTGCTTGTGATTAACTCTACCATCAGTTTTATCGAGGAAAATAATGCGGGTAATGCTGCTGCTGCTCTCATGGCTCGTCTTGCAC CCAAAGCTAAGGTTCTTCGAGATGGAAGATGGAATGAGCAAGATGCTGCTGTTTTAGTTCCCGGTGACATTATTAGCATCAAACTTGGAGATATTATCCC CGCTGATGCTCGTTTACTAGAAGGAGATCCGCTTAAAATTGATCAATCTGCACTTACTGGTGAGTCCCTTCCCGTGACAAAAGGTCCTGGAGATGGTGTT TACTCTGGTTCTACTTGCAAACAAGGAGAGATTGAAGCAGTAGTTATTGCCACTGGTGTCCACACCTTCTTTGGGAAGGCTGCTCACCTTGTGGATACAA CTAACCAAGTCGGCCACTTCCAAAAGGTCTTGACTGCAATAGGGAACTTCTGCATATGTTCAATTGCTATTGGGATGGTTATAGAGCTTATTGTCATGTA CCCCATTCAAGATAGGAAATATCGTCCTGGAATTGACAATCTTCTTGTGCTTCTCATTGGTGGAATTCCAATTGCCATGCCTACGGTCCTCTCAGTCACA ATGGCTATTGGTTCTCATAGGTTATCGCAGCAGGGAGCCATCACGAAGAGAATGACTGCAATTGAAGAGATGGCTGGCATGGATGTGCTTTGCAGTGACA AGACTGGAACATTGACATTAAACAAACTAACTGTGGACAAAAATCTCATTGAGGTTTTTGCAAAAGGAGTAGATGCAGATGCTGTTGTTTTGATGGCAGC TCGAGCCTCTAGAATAGAGAACCAAGATGCAATAGATACTGCTATTGTTGGAATGCTGGCTGATCCAAAGGAGGCACGTGCTGGAATTCAGGAAGTTCAT TTCCTTCCTTTCAATCCTACTGATAAGCGGACAGCCTTGACATATATTGATAGTGGAGGTAAAATGCACAGAGTCAGCAAAGGTGCACCAGAACAGATTC TAAATCTTTCACACAATAAGTCAGACATTGAGCGAAGAGTACATGCCGTGATTGATAAATTTGCAGAAAGAGGTTTACGTTCTCTTGCGGTAGCATACCA GGAGGTTCCAGAAGGAAGGAAAGAGAGTGCTGGAGGCCCTTGGCAATTCATTGGCCTCTTGCCTCTCTTTGATCCACCAAGGCATGATAGTGCGGAGACT ATTAGGCGGGCTTTGAATCTTGGAGTGAATGTCAAAATGATCACTGGGGATCAACTGGCGATAGGAAAGGAAACTGGACGTCGTTTGGGAATGGGAACCA ACATGTACCCTTCATCTGCATTGCTAGGGCAAAACAAGGATGAGTCTATTGCCGCTTTACCAATTGATGAATTAATAGAAAAAGCTGATGGATTTGCTGG CGTTTTCCCTGAGCACAAATATGAGATAGTAAAACGTTTGCAAGCTAGGAAACATATCTGTGGGATGACTGGTGATGGAGTCAATGATGCTCCTGCTCTC AAGAAGGCTGACATTGGGATTGCTGTTGCTGATGCAACTGATGCAGCTCGTAGTGCTTCTGATATTGTCCTTACTGAACCTGGCCTTAGTGTCATTATCA GTGCTGTCTTGACAAGTCGAGCAATCTTTCAGAGGATGAAAAATTACACGATCTATGCAGTTTCCATTACAATCCGTATTGTGCTTGGTTTCATGCTGCT GGCTCTCATATGGAAGTTTGACTTTCCACCTTTTATGGTGCTTATCATTGCCATTCTCAATGATGGTACCATAATGACAATATCAAAAGATAGGGTGAAG CCATCTCCTCTACCAGACAGCTGGAAGTTGGCGGAGATATTTACAACTGGAATTGTTCTTGGTAGTTATCTGGCCATGATGACTGTCATATTCTTTTGGG TAGCATATAAAACAGACTTCTTCCCAAGGGTATTTGGAGTGTCAACCCTGGAGAAAACAGCTCACGATGACTTCCGAAAGCTTGCATCAGCAATTTATTT GCAAGTTAGCACTATCAGTCAAGCACTTATATTTGTCACCCGATCTCGAAGTTGGTCATTTGTTGAACGTCCTGGGTTATTACTTGTGGTGGCTTTTATC ATTGCTCAGCTGATTGCCACTCTGATTGCAGTCTATGCAAATTGGAGCTTTGCGGCAATTAAAGGGATCGGTTGGGGTTGGGCTGGTGTAATTTGGCTCT ATAATATCATCTTCTATTTTCCACTTGACTTCATCAAGTTCTTTATCCGCTATGCTTTGAGTGGGAGGGCATGGGATCTTGTAATTGAGCAAAGGATTGC TTTCACAAGGCAAAAAGATTTTGGGAAGGAACAACGCGAGCTTCAATGGGCACATGCACAGAGAACCTTGCATGGGTTGCCACTACCAGACACGAAGATG TTCACTGAGCGGACACATTTCACCGAACTCAATCAGATGGCTGAGGAAGCAAAAAGGAGAGCTGAAATTGCAAGGTTGAGGGAACTCCATACACTCAAGG GTCATGTAGAATCTGTGGTGAGGCTGAAGGGCCTTGATATAGACACGATTCAACAAGCATACACAGTCTGA
AA sequence Show only first row Show all	>Potri.012G071600.5 pacid=42782589 polypeptide=Potri.012G071600.5.p locus=Potri.012G071600 ID=Potri.012G071600.5.v4.1 annot-version=v4.1 MGDKGEVLEAVLKETVDLENIPIEEVLENLRCSREGLTTQAAEERLAIFGHNKLEEKKERKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDF VGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWNEQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGV YSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAIGMVIELIVMYPIQDRKYRPGIDNLLVLLIGGIPIAMPTVLSVT MAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDADAVVLMAARASRIENQDAIDTAIVGMLADPKEARAGIQEVH FLPFNPTDKRTALTYIDSGGKMHRVSKGAPEQILNLSHNKSDIERRVHAVIDKFAERGLRSLAVAYQEVPEGRKESAGGPWQFIGLLPLFDPPRHDSAET IRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPAL KKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVK PSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWVAYKTDFFPRVFGVSTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVVAFI IAQLIATLIAVYANWSFAAIKGIGWGWAGVIWLYNIIFYFPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLPLPDTKM FTERTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Potri.012G071600 [exp]	0	1	HA2.1
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.008G017800 [exp]	3.74	0.5787
AT2G21120			Protein of unknown function (D...		Potri.001G305700 [exp]	7.07	0.5805
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G093900 [exp]	13.41	0.5767
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.001G247400 [exp]	17.32	0.5339
AT3G55030		PGPS2	phosphatidylglycerolphosphate ...		Potri.010G214900 [exp]	25.21	0.5593
AT2G24420			DNA repair ATPase-related (.1....		Potri.006G276900 [exp]	39.76	0.5312
AT3G26935			DHHC-type zinc finger family p...		Potri.015G101900 [exp]	40.75	0.5439
AT1G51940			protein kinase family protein ...		Potri.001G190200 [exp]	40.91	0.5140
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.002G016300 [exp]	52.30	0.5249	Pt-SMT1.1
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.003G114000 [exp]	54.66	0.5057

Compare expression of checked genes

Potri.012G071600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.