Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CDPK1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74740 931 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT1G18890 926 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT5G12480 766 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT3G51850 765 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT5G19450 752 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT3G57530 732 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 712 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT2G31500 639 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 577 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 568 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066200 [exp] 1083 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G054600 [exp] 781 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.016G117200 [exp] 773 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G052900 [exp] 763 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G101300 [exp] 759 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.001G257100 [exp] 746 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.009G052700 [exp] 743 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.007G127000 [exp] 643 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.010G244800 [exp] 569 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008631 [exp] 931 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10036667 [exp] 837 / 0 AT1G18890 804 / 0.0 calcium-dependent protein kinase 1 (.1) Lus10042185 [exp] 804 / 0 AT1G74740 777 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10009947 [exp] 760 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10004807 [exp] 759 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 751 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027361 [exp] 748 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10027808 [exp] 744 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10014907 [exp] 743 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10026742 [exp] 709 / 0 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.012G071700.1 pacid=42783225 polypeptide=Potri.012G071700.1.p locus=Potri.012G071700 ID=Potri.012G071700.1.v4.1 annot-version=v4.1 ATGGGGAACTGTAACACCTGCGTAAGACCAGACACCTCACCAGAAGACACCGAAACACACCAAACCAAAACCAAGAAACCAAAAAAGTCAAATCCTTACT CAGAAGACTTCCCCCACCACCAAACCACCACCAACAACCGATCCTCACCTGCTCCGATCCGGGTTCTAAAAGACTCATCTGTCCCACTTAGCCACCGCCC ACGAATCTCCGACAAGTACATACTCGGCCGTGAACTGGGCCGTGGAGAATTCGGCATCACATATCTGTGTACGGACAGAGAGAATAAAGAAGCATTAGCA TGCAAGTCAATTTCGAAGAGGAAATTGAGGACCGCTGTGGACATAGAGGATGTCAGGAGAGAAGTGGCAATCATGTCTACTTTGCCTGAGCATCCAAATA TTGTCAAATTGAAAGCTACTTATGAGGATTATGAAAATGTGCATTTGGTTATGGAGTTGTGTGAAGGAGGTGAGCTTTTTGATAGGATAGTGGCTAGAGG GCATTATAGTGAGAGAGCTGCGGCGCATGTTGCCAGAACCGTTGCTGAAGTTGTTAGGATGTGTCATGCTAACGGGGTTATGCATAGAGATTTGAAGCCT GAGAACTTTTTGTTTGCTAATAAGAAGGAGAATTCTGCTCTTAAGGCTATTGATTTTGGCTTGTCGGTGTTCTTTAAGCCAGAGGAGAGGTTTTCAGAGA TAGTGGGGAGTCCATATTATATGGCACCAGAAGTGTTGAAGAGGAATTATGGACCGGAGGTTGATGTGTGGAGTGCCGGAGTTATTCTTTATATTTTGTT ATGTGGGGTTCCTCCATTTTGGGCAGAGACCGAGCAGGGTGTTGCTCTTGCGATTTTGAGAGGGGTGATTGATTTTAAGAGGGAACCTTGGCCCCAAATT TCTGAGAGTGCTAAAAGTCTAGTTCGGCAGATGTTGGAGCCAGATCCGAGAAAGCGCTTAAATGCTCAACAGGTTCTTGAACATCCCTGGTTACAAAATG CAAAGAAAGCCCCAAATGTCCCATTAGGAGATATTGTGAGGTCAAGGCTCAAGCAGTTCTCTGTGATGAATAGATTTAAGAAGAAAGCATTGCGGGTAAT TGCGGAGCACTTAACTGTTGAAGAGGTTGAAGTAATCAGAGATATGTTTGCATTGATGGATACTGACAATGATGGTAAAGTAACATATGAGGAACTGAGA ACTGGTCTTCGGAAGGTTGGTTCACAGTTGGCTGAACCAGAGATAAAGATGCTGATGGAAGTGGCGGATGTTGATGGGAATGGAGTATTGGACTATGGAG AGTTTGTGGCAGTCACAATTCACTTGCAGAAGATGGAAAATGATGAGCATTTTCGCAGGGCATTCATGTTTTTTGATACAGATGGTAGTGGATATATTGA ATTAGATGAGTTACGAGGGGCATTAGCAGATGAATATGGGGAAACTGATAATGATGTGCTGAATGACATCATGCGTGAAGTCGACACTGACAAGGATGGT TGTATCAGTTATGAGGAGTTTGTTGCAATGATGAAAGCTGGAACTGATTGGAGAAAGGCATCTCGACAGTATTCAAGGGAGAGGTTCAAGAGTTTGAGCC TTAACCTGATGAAGGATGGTTCATTGCATCTCCACGATGCGTTTACCGGTCAATCTGTTGCTGTCTAA
AA sequence Show only first row Show all	>Potri.012G071700.1 pacid=42783225 polypeptide=Potri.012G071700.1.p locus=Potri.012G071700 ID=Potri.012G071700.1.v4.1 annot-version=v4.1 MGNCNTCVRPDTSPEDTETHQTKTKKPKKSNPYSEDFPHHQTTTNNRSSPAPIRVLKDSSVPLSHRPRISDKYILGRELGRGEFGITYLCTDRENKEALA CKSISKRKLRTAVDIEDVRREVAIMSTLPEHPNIVKLKATYEDYENVHLVMELCEGGELFDRIVARGHYSERAAAHVARTVAEVVRMCHANGVMHRDLKP ENFLFANKKENSALKAIDFGLSVFFKPEERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQI SESAKSLVRQMLEPDPRKRLNAQQVLEHPWLQNAKKAPNVPLGDIVRSRLKQFSVMNRFKKKALRVIAEHLTVEEVEVIRDMFALMDTDNDGKVTYEELR TGLRKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQKMENDEHFRRAFMFFDTDGSGYIELDELRGALADEYGETDNDVLNDIMREVDTDKDG CISYEEFVAMMKAGTDWRKASRQYSRERFKSLSLNLMKDGSLHLHDAFTGQSVAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Potri.012G071700 [exp]	0	1	CDPK1.3
AT3G11920			glutaredoxin-related (.1)		Potri.008G144800 [exp]	2.82	0.6324
AT1G34760		RHS5, GF14OMICR...	ROOT HAIR SPECIFIC 5, general ...		Potri.005G164500 [exp]	7.28	0.6350
AT5G28850			Calcium-binding EF-hand family...		Potri.013G047300 [exp]	9.74	0.5945
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.019G068700 [exp]	12.00	0.5847
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	12.84	0.6225
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	18.00	0.6025	ATFYPP3.2
AT2G46520			cellular apoptosis susceptibil...		Potri.002G172700 [exp]	32.72	0.5478
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Potri.017G090800 [exp]	39.24	0.5392
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.001G198100 [exp]	45.09	0.5547	ATTIM23.2
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.001G270100 [exp]	51.38	0.5441	RAB11.15

Compare expression of checked genes

Potri.012G071700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.