Plant FIBer expression Database

Potri.012G071900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G47890 1632 / 0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
AT3G47910 1613 / 0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1.2)
AT1G65130 133 / 5e-31 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
AT2G27630 130 / 4e-30 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
AT1G65120 127 / 3e-29 Ubiquitin carboxyl-terminal hydrolase-related protein (.1.2)
AT1G65160 117 / 2e-28 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
AT1G65110 122 / 1e-27 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
AT5G51530 120 / 4e-27 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
AT1G65200 120 / 6e-27 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
AT2G27650 118 / 2e-26 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G066500
[exp]
2524 / 0 AT3G47890 1634 / 0.0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Potri.017G089250
[exp]
316 / 4e-87 AT3G47890 317 / 2e-87 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Potri.018G107500
[exp]
56 / 2e-07 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1)
Potri.006G185200
[exp]
54 / 1e-06 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042186
[exp]
1830 / 0 AT3G47890 1654 / 0.0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Lus10008630
[exp]
1523 / 0 AT3G47890 1408 / 0.0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Lus10032623
[exp]
50 / 2e-05 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1)
Lus10035825
[exp]
48 / 9e-05 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1)
Lus10043127
[exp]
47 / 0.0001 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1)
Lus10036607
[exp]
45 / 0.0004 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04780 DUF629 Protein of unknown function (DUF629)
PF04781 DUF627 Protein of unknown function (DUF627)
Representative CDS sequence
>Potri.012G071900.1 pacid=42782833 polypeptide=Potri.012G071900.1.p locus=Potri.012G071900 ID=Potri.012G071900.1.v4.1 annot-version=v4.1
ATGGGGAATAGAAAACGGCCTCTAACTTCTCGTACCAAACACCCTCCTTCACCGTCTGCGGCGGCGCCCACTGTGGCTTCCGATGAAACCGACCTCTATC
CTTCTCCTAATTCGGTTTCTACAGAATCGGACGGTTCTTCAACAATCAAGCACGAATGTGACCGCGCCTTAAATGCTCTCCGTCGTGGAAACCACACAAA
AGCCCTACGTATCATGAAGGATTCATGCGCTAAACACGGCGGCGACGCCTTAATCCACCGTGTTCATAGTACGGTGTGTGTTAAAGTTGCTTCAATAATC
GACGACACTAACAGTAAGCAGCGGTATTTAAAGAACGCAATCGAAGCTGCTCGTAGAGCCGCGGAATTGTCTCCGAATTCGATCGAGTTCGCTCATTTCT
ATGCGAATTTACTGTATGAGGCCGCGAATGATGGGAAAGAGTATGAAGAGGTAATGAAAGAGTGTGACCGTGCTTTGAAAATTGAGAATCCGATTGATCC
TGCGAAGGAGAGTTTGCAGGAGGAGAGTCAGCAGAAGATAGCTACTGCGGAAGGGAGGATTGCACATGTGCAAGGTGAGTTGAAAAATTTGCAGCAGAAG
TCGAACATTGCTTCGATTTCTACTTGGATGAAGAATTTGGGGACTGGTGAGGAGATTAGGTTAATACCTATACGAAGAGCTACTGAAGATCCAATGGAAG
TTAGGTTGGTGCAAACAAGGCGGCCAAATGAGATTAAGAAGGCTACTAAGACACAGGAAGAGAAGAGGAAAGAAATTGAAGTTAGGGTTGCTGCTGCGAG
GTTGTTGCAGAAGTCGGAGATAGGTTTGGGACAGCGTGAGGGAGAGAGGAGTGATAAAGGAGTGGAGGTAACGCCTTGGAGTGATAGGAGAGGAGAGAGG
AGGAAGAATGGGAGTAATGCAAGGAAGAATGGGACTAACACTGAGAGAAAGGATTGGGTTCGGTCCTATTGGAATTCGATGAGCTTGGAAATGAAGAGGG
AGTTGTTGAAAATTAAGGTCAGTGATTTGAAGAGTTATTTTGTGTCATCAAAGAATGGATTGGCGAGTGATGTTTTGAATGAGGCGTTGGCTTGCAGCGA
GGAGAATAAGAGCTGGAGGTTTTGGGTGTGTTGTCGATGCAATGAAAAGTTTGCGGACTCAGATAGTCACTTGCATCATGTTGTGCAAGAGCACATGAGG
AGTCTTATGCCGAAGATGCAGGAGGTTTTGCCACAGAGTCCTGACAATGAGTGGATTGAAATGATTAACAGTTGCTCCTGGAAACCATTAGACATTTCCT
CTGCGGTTAAGATGCTTTGGAATCGAGGGAAATGTCAGAATGGAGAACTTGTTGAGGATATTTGCTCAGAGAACCATAATGAGGACGGTGATGGTTGTTT
CAAAGACGCATGGGATTCTTCTCCAGAGAAGGAAAATTTGAGGGATGGTTGTATTAGTTGTCCTGTGAGCAGCAGCAACTCCGGTAAAGTTTACAGTATT
GAAGGTAAAGAATTTGATGGGAACCAACTGTCTATTGCATGCACTATTGAGAGCTGGCCTATTTCAGAGGATTCTGAGCGAGCAAAGCTCCTTGAAAAAA
TTCATGATGTATTTCAGGCACTTATTAGACATAAATATCTTGCTGCAAGCCATCTTAACAAGGTGATACAATTTACAGTGGATGAGCTACAGAGTCTTGC
TACTGGTTCTCAACTTCTGAACCATGGTGTGGGCCAGACACCTATGTGCATTTGCTTTCTGGGAGCATTCCAGCTCAAAAAGATCCTCAAATTCTTACAG
GAACTATCTCATTCTTGTGGTTTAGGCATGTCTCCTGAGAAAAGTAGCGTTGTAGATGACATGAATACTGGTGCTAAAGGTCCTGAAATAAAAGAGAATA
TTGTTCTTAATGATGATGCATCTTGTCTCTACTTGGATAAATGTTTATTGCCATTGGAATATGCTCCAAGAACATGTCCTGATGATGATGTCACCACAGC
AACTTCAACTATTGTTGGCAATGGAGATGGGGTTCTACCTGCTGTTGATACTTTACTATCATGGATATTTGCAGGCCTTTCTAGCGGAGAGCAATTACAA
TCATGGATCCGTACAAAAGAAGAGAGAATGAATCAAGGGATGGAAATTCTCCAGACGCTTGAGAAGGAGTTTTACCATCTGCAGAGCCTTTATGAGAGGA
AATGTGAACATTTAAGCTATGAGCAAGCATTGCAGGCCGTGGAGGATCTCTGTCTTGAAGAAGGTAAGAAGAGGGAAACTGACACGCTCTTTGAACTTAG
AAGCTATGATTCTGTTCTTAGGCAGCGGAGAGAGAAGCTTGTTGAGAATGAGCATGATGCTCTGTTCTTTAGCAGTAGATTTGAGTTAGATGCTATATCA
AATGTGTTAAAAGAAGCAGATACTCTGAATGTCAATCAATATGGGTACGAGGATACTTATGGTGGTATAACTTCTCAGTTTTGTGACTTGAAATCTGGTG
AAGATGGTAATTGGAGAACCAAGGACCAAATGCATCAAGTGGAAACTTTCATAGAAATTGCTATCCAGCGACAGAAAGAACAGTTGTCAATAGAGCTCAG
CAAAATTGATGCCCAAATCATGCGGATTGTTACTGGAATGCAACAGTTGGAACTCAAGCTCGAGTCAGTTTCTGCCCTTGATTATCGATCAATCTTGCCA
CCTCTAGTGAAGTCATACATGAGGGCACACTTGGAGGATCTAGCTGAGAAGGATGCCACAGAGAAGTCTAATGCTGCAGGAGAAGCTTTTTTGGCGGAGC
TTGCCCTTGATTCCAAGAAGGGTACCCAGGGAAGAAGTGATATTTCAAGAAATACATTGGAGAAGGGGAAGGATAGGAGAAAGAACAAAGAGTATAAGAA
AACCAAGGAATTGAAGGTTGCTGCTGCTAGCGAGCAGCACTTGCTTCAAGATGTGACTAATGAAAGGGGTTCCTTTCCAGTTGCATCTGATGGTGACTAT
CCAGATTCTCAGTGTCATCTTTCCAGAAATGGTGATGACTTGAGACAACAGGAGGAAGAATTTAGATGGAAAATTGAGATTGAAGAGGAGGAAAGAATGC
TTGAAGAATCTTTAAAGTATCAAAGACGAATAGAGAATGAGGCCAAACAGAAACATCTTGCTGAGCAACAGTACAAAAAATCTCATATAACTCTTCCAGA
GAAGTTGTCTGGGGGAATATGCAATATTTGCTTTGATCCTGCTGCTGATTCCTGTGAGCCATTGGAACAGTTGACGCAGAAGAGTGGGTTCCCCAACAAT
TTAGAAGGCATGCCTATGACAACTGCCAGTGAGCCATCTACTGGAGGAAATGTGGAGGGTGGTCCTTCTGATCGACGGCCAGGTAGGAAAAGTAGGAGGC
AGAAAAGCTCCGCTAAATATGATGGAAAAAATCAACCCATGTCATGTGAAATGGAAAATATTGAAGTTGGAAGCATTACTCCAAATTTGGGAGACAGTGC
GACTAAGACTCTGAGACAGTTACAAGTAGAGGAGGATGATGAGGAAAGGTTTCAAGCTGACCTTGAAAGAGCCGTGCGCCAAAGCCTTGTTGCAACTGAA
AATGTGGATGGAACTGATGTATTTGGCACTGGCTTGAAGAATGATATTGGTGAATACAATTGCTTCCTGAATGTTATCATACAGTCCTTGTGGCATTTAA
GGCGGTTTCGAGATGAGTTCTTGAGTAGATCAAAATCAGAGCATGTTCATGTGGGAGATCCATGTGTTGTCTGTGCATTGTATGATATTCTTACTGCTAT
CAGCATGGCATCCACAGATACACGAAGGGAAGCGGTTGCTCCTACATCCCTCAGGATAGCTTTGAGCAATTTGTATCCTAATAGTAATTTCTTCCAGGAG
GGTCAGATGAATGATGCATCTGAAGTATTGGCTGTAATATTTGACTGCCTTCATCGAGCATTTACCACTGGTTTACATGGCTCTGATTCTGAATCAGTGG
AATGTAGTGGCATGGAATCTTGGGAATGTACAAAAAAGAATGCTTGTATAGTGCACTCTCTTTTTGGAATGGACATTTCAGAACAAATGAATTGCCAGAG
TTGTGGTGTGGAGTCCAGACATTTGAAGTACAATGCTTTCTTTCATAATATAAATGCCACTGCCCTCCGAACAATGAAGGTCATGTGTGCTGAAAGCTGT
TTTGATGAACTTTTAAATCTTGTTGAAATGAATCACCAGTTAACTTGTGATCCCGAGGCTGGTGGTTGTGGGAAGCCCAATTACATCCATCACATTATGT
CAACTCCACCACATGTTTTTACAACAGTTCTGGGCTGGAGAAAAACCTGTGAAAGCATTGATGATATAAAGGCAACATTGGCTGCTCTAAGTACTGAGAT
AGATATCAGTGTTTTTTATCGTGGTCTGGATCTGAAGAACATACGTAGCTTGGTTTCAGTGGTGTGCTACTACGGGCAACATTATCATTGCTTCGCCTAT
AGTCACGATCACAGTCAGTGGATTATGTATGATGACAAGACTGTCAAGGTAATTGGTAGCTGGACTGAGGTTCTTATCATGTGTGAAAAGGGACACTTGC
AACCTCAAGTTCTGTTCTTTGAAGCTGGAAACTAG
AA sequence
>Potri.012G071900.1 pacid=42782833 polypeptide=Potri.012G071900.1.p locus=Potri.012G071900 ID=Potri.012G071900.1.v4.1 annot-version=v4.1
MGNRKRPLTSRTKHPPSPSAAAPTVASDETDLYPSPNSVSTESDGSSTIKHECDRALNALRRGNHTKALRIMKDSCAKHGGDALIHRVHSTVCVKVASII
DDTNSKQRYLKNAIEAARRAAELSPNSIEFAHFYANLLYEAANDGKEYEEVMKECDRALKIENPIDPAKESLQEESQQKIATAEGRIAHVQGELKNLQQK
SNIASISTWMKNLGTGEEIRLIPIRRATEDPMEVRLVQTRRPNEIKKATKTQEEKRKEIEVRVAAARLLQKSEIGLGQREGERSDKGVEVTPWSDRRGER
RKNGSNARKNGTNTERKDWVRSYWNSMSLEMKRELLKIKVSDLKSYFVSSKNGLASDVLNEALACSEENKSWRFWVCCRCNEKFADSDSHLHHVVQEHMR
SLMPKMQEVLPQSPDNEWIEMINSCSWKPLDISSAVKMLWNRGKCQNGELVEDICSENHNEDGDGCFKDAWDSSPEKENLRDGCISCPVSSSNSGKVYSI
EGKEFDGNQLSIACTIESWPISEDSERAKLLEKIHDVFQALIRHKYLAASHLNKVIQFTVDELQSLATGSQLLNHGVGQTPMCICFLGAFQLKKILKFLQ
ELSHSCGLGMSPEKSSVVDDMNTGAKGPEIKENIVLNDDASCLYLDKCLLPLEYAPRTCPDDDVTTATSTIVGNGDGVLPAVDTLLSWIFAGLSSGEQLQ
SWIRTKEERMNQGMEILQTLEKEFYHLQSLYERKCEHLSYEQALQAVEDLCLEEGKKRETDTLFELRSYDSVLRQRREKLVENEHDALFFSSRFELDAIS
NVLKEADTLNVNQYGYEDTYGGITSQFCDLKSGEDGNWRTKDQMHQVETFIEIAIQRQKEQLSIELSKIDAQIMRIVTGMQQLELKLESVSALDYRSILP
PLVKSYMRAHLEDLAEKDATEKSNAAGEAFLAELALDSKKGTQGRSDISRNTLEKGKDRRKNKEYKKTKELKVAAASEQHLLQDVTNERGSFPVASDGDY
PDSQCHLSRNGDDLRQQEEEFRWKIEIEEEERMLEESLKYQRRIENEAKQKHLAEQQYKKSHITLPEKLSGGICNICFDPAADSCEPLEQLTQKSGFPNN
LEGMPMTTASEPSTGGNVEGGPSDRRPGRKSRRQKSSAKYDGKNQPMSCEMENIEVGSITPNLGDSATKTLRQLQVEEDDEERFQADLERAVRQSLVATE
NVDGTDVFGTGLKNDIGEYNCFLNVIIQSLWHLRRFRDEFLSRSKSEHVHVGDPCVVCALYDILTAISMASTDTRREAVAPTSLRIALSNLYPNSNFFQE
GQMNDASEVLAVIFDCLHRAFTTGLHGSDSESVECSGMESWECTKKNACIVHSLFGMDISEQMNCQSCGVESRHLKYNAFFHNINATALRTMKVMCAESC
FDELLNLVEMNHQLTCDPEAGGCGKPNYIHHIMSTPPHVFTTVLGWRKTCESIDDIKATLAALSTEIDISVFYRGLDLKNIRSLVSVVCYYGQHYHCFAY
SHDHSQWIMYDDKTVKVIGSWTEVLIMCEKGHLQPQVLFFEAGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G47890 Ubiquitin carboxyl-terminal hy... Potri.012G071900
[exp]
0 1
AT1G24460 TNO1 TGN-localized SYP41 interactin... Potri.010G052600
[exp]
1.73 0.8022
AT5G04460 RING/U-box superfamily protein... Potri.010G231100
[exp]
2.00 0.7851
AT5G10940 ASG2 ALTERED SEED GERMINATION 2, tr... Potri.005G158300
[exp]
4.12 0.7029
AT3G23900 RNA recognition motif (RRM)-co... Potri.017G058300
[exp]
6.92 0.7739
AT5G11700 unknown protein Potri.018G058300
[exp]
8.24 0.7721
AT2G23460 ATXLG1, XLG1 extra-large G-protein 1 (.1) Potri.005G131200
[exp]
13.49 0.7137 XLG.1
AT5G44180 HD Homeodomain-like transcription... Potri.007G135500
[exp]
16.52 0.7304
AT2G41520 TPR15 tetratricopeptide repeat 15, H... Potri.006G047700
[exp]
16.88 0.7482
AT1G77600 ARM repeat superfamily protein... Potri.002G084300
[exp]
17.43 0.7049
AT5G64070 PI-4KBETA1, PI4... phosphatidylinositol 4-OH kina... Potri.005G059000
[exp]
18.57 0.7110

Potri.012G071900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.