Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LBD27.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47870 180 / 5e-55 AS2 ASL29, SCP, LBD27 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) AT3G13850 120 / 9e-33 AS2 LBD22 LOB domain-containing protein 22 (.1) AT5G63090 100 / 1e-25 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G27650 97 / 5e-25 AS2 LBD25 LOB domain-containing protein 25 (.1) AT5G66870 100 / 9e-25 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT2G30130 98 / 1e-24 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT1G65620 97 / 2e-24 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT1G72980 96 / 9e-24 AS2 LBD7 LOB domain-containing protein 7 (.1) AT3G50510 95 / 1e-23 AS2 LBD28 LOB domain-containing protein 28 (.1) AT1G31320 94 / 1e-23 AS2 LBD4 LOB domain-containing protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066700 [exp] 424 / 1e-151 AT3G47870 191 / 2e-59 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.003G039700 [exp] 125 / 9e-34 AT3G13850 184 / 6e-56 LOB domain-containing protein 22 (.1) Potri.001G196400 [exp] 116 / 5e-31 AT3G13850 184 / 3e-57 LOB domain-containing protein 22 (.1) Potri.018G052700 [exp] 102 / 3e-26 AT3G13850 85 / 1e-19 LOB domain-containing protein 22 (.1) Potri.009G076900 [exp] 99 / 2e-25 AT2G30130 228 / 2e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.005G134900 [exp] 101 / 5e-25 AT5G66870 254 / 8e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.008G072800 [exp] 97 / 1e-24 AT2G30130 229 / 8e-78 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.003G149000 [exp] 97 / 1e-24 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1) Potri.007G039500 [exp] 100 / 2e-24 AT5G66870 256 / 1e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008629 [exp] 296 / 2e-100 AT3G47870 175 / 2e-52 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10036665 [exp] 287 / 3e-97 AT3G47870 182 / 2e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10033111 [exp] 283 / 2e-95 AT3G47870 194 / 5e-60 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10042187 [exp] 140 / 8e-41 AT3G47870 47 / 4e-06 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10003789 [exp] 124 / 4e-34 AT3G13850 162 / 7e-49 LOB domain-containing protein 22 (.1) Lus10002513 [exp] 121 / 4e-33 AT3G13850 161 / 1e-48 LOB domain-containing protein 22 (.1) Lus10013510 [exp] 108 / 4e-28 AT3G13850 143 / 1e-41 LOB domain-containing protein 22 (.1) Lus10025840 [exp] 102 / 8e-26 AT5G66870 184 / 4e-57 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10018993 [exp] 100 / 1e-25 AT3G26660 134 / 2e-41 LOB domain-containing protein 24 (.1) Lus10031285 [exp] 99 / 3e-25 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.012G072000.2 pacid=42783035 polypeptide=Potri.012G072000.2.p locus=Potri.012G072000 ID=Potri.012G072000.2.v4.1 annot-version=v4.1 ATGACTCTCAAGGGAGGCACCAGCCAAGCTTGTGCTTCGTGCAAGTATCAAAGGAGAAAGTGCTCCTCTGAGTGTCCTCTAGCACCTTACTTCCCTTCTG AACAACCAAAGATGTTCCAAAATGCTCATAAGTTGTTTGGTGTACGCAAGATTCTCAGGATACTTGAGAATCTTGATTATCTCCAGAAGGAGGAAGCCAT GCGTTCTATTATTTACCAATCCAATATTCGTGACAGGTTTCCTGTTCATGGCTGTTTGGGCATCATCTATCAACTGCATTTCCAGATTCGGCAGGCGGAA GAAGAGCTCCGTGCTGTCTACGCACACCTTGAGATGTACAGGCAGCATCACCACCATCAGATTGCAGCTTTGACAGAGGATGTTCCCTCGCAATTAGAAT TAGGAATGGCACTTCCTCAGCCTTGCTTGGCACAACAGTACTCCTACTCTATTAGCAGTAATATTGGTTACAGCTCTGGTTACTTGGATTCTAATGATAA TGTTGGGAATCAGCTTTGGAGTCAACATCCTTATGCTACTAACAGTAACACCAATTACACGCCAATTATTCAGTCTCAGCTAGATGCTTCTCAGCCACTA TCTACCCAACAAGAAATTGTTCAAGATTATGATGAGATGCATTCATTTTTTGATACTATTGACGATAGGCAATCATATATAGAAACTAAAGAACCCTATG AGTCCAGCTCAGAAGAATCGTTGAAGGACACTACACAATCCATGGAGCATGTTGCAGAGAATGAATTGAAGAGTGCTGCTGCATGTTTCAGTCTTACCAG TGTCAACTGA
AA sequence Show only first row Show all	>Potri.012G072000.2 pacid=42783035 polypeptide=Potri.012G072000.2.p locus=Potri.012G072000 ID=Potri.012G072000.2.v4.1 annot-version=v4.1 MTLKGGTSQACASCKYQRRKCSSECPLAPYFPSEQPKMFQNAHKLFGVRKILRILENLDYLQKEEAMRSIIYQSNIRDRFPVHGCLGIIYQLHFQIRQAE EELRAVYAHLEMYRQHHHHQIAALTEDVPSQLELGMALPQPCLAQQYSYSISSNIGYSSGYLDSNDNVGNQLWSQHPYATNSNTNYTPIIQSQLDASQPL STQQEIVQDYDEMHSFFDTIDDRQSYIETKEPYESSSEESLKDTTQSMEHVAENELKSAAACFSLTSVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Potri.012G072000 [exp]	0	1	Pt-LBD27.1
AT4G25590		ADF7	actin depolymerizing factor 7 ...		Potri.012G141600 [exp]	3.31	0.6117	ADF.1
AT2G45380			unknown protein		Potri.002G147150 [exp]	8.24	0.5447
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.006G023801 [exp]	10.00	0.6202
AT5G28780			PIF1 helicase (.1)		Potri.011G042150 [exp]	15.65	0.6359
AT5G26594		ARR24	response regulator 24 (.1)		Potri.019G024900 [exp]	18.52	0.6359
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.019G091200 [exp]	19.79	0.6359	FUCT3.1
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.004G036000 [exp]	20.34	0.6279
					Potri.001G190450 [exp]	22.36	0.5664
					Potri.010G007833 [exp]	30.00	0.6097
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.005G187700 [exp]	33.67	0.5869

Compare expression of checked genes

Potri.012G072000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.