Plant FIBer expression Database

Potri.012G072200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G18950 691 / 0 DDT domain superfamily (.1)
AT5G25580 228 / 1e-67 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G067300
[exp]
1143 / 0 AT1G18950 665 / 0.0 DDT domain superfamily (.1)
Potri.018G035700
[exp]
317 / 3e-100 AT5G25580 308 / 3e-100 unknown protein
Potri.006G244800
[exp]
304 / 3e-95 AT5G25580 297 / 3e-96 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042167
[exp]
783 / 0 AT1G18950 697 / 0.0 DDT domain superfamily (.1)
Lus10004259
[exp]
778 / 0 AT1G18950 695 / 0.0 DDT domain superfamily (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02791 DDT DDT domain
Representative CDS sequence
>Potri.012G072200.1 pacid=42783611 polypeptide=Potri.012G072200.1.p locus=Potri.012G072200 ID=Potri.012G072200.1.v4.1 annot-version=v4.1
ATGTCTCGGGAACAACCCTCGCCTTCACCGATCTCCCAAAACGACGCCCAAACTCCTCTAAACGACGACGCCCAAGCCCAATCCCAATCCCAAACCCCGC
CTGTTAACAGGAGCAATCGGCCGTCGCGAGCTTGTACAATACGGGCGGCGGCGAGGCTGCAACAGCAGGCGGTGATCGAGCGGAAGCAGAAGCCGAAGAA
GCAGGAACAGCAACAGCAGTTAGATAAGTCTTCGGTGCAGCAGAAAGAGCAATGCAGTGGTGGAAGTAGCAAGATCGTGACGCAGCTGGTGGCCCCTCCT
GAGCCGGCACAGTTGCCGAGGTGGAGCCTCCGCTCCATGTGGGAATTAGCTTCAGTACTCCATTTTTTAAATGTATTTAGGCATCTATTGAATATAACAG
TGGAGTTCTCAGCTGAGGAGTTTGAGACAGCTTTGATTACACCTAATGATACTTTGGGGGATATTCATATGCCTTTGTTAAAGGCAATCCCCCCTGTTAC
CAGAATGGCCCTTACACGAGATACTTGGGTTACTGTTTTGTGCAGAAAATTAAGAGACTGGTGGCACTGGGTTGCAGATGGGGAACTTCCCTTGGTTGCT
TCACATGGGGTGGAGGTTGAAGTGTATAAAACACTTGATCCTAGTGTCCGTGTGGTGATACTGAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATA
TACGGAATTACATTGACAACTCCCTCAAGCATGGCATTCAACTTTCATTATTTCGCAAGGAACGTATTGGAGGTGATTCACAAGGAATTAATTACTGGTA
TGAAGATGATCCGACGATTGGTCAAAGGTTATACCGGGAAATAAGAAAAACTGAGGTGAAGGCTAAAGCAAAGGCAAAGGGATCTCAAATCATCCCTAAT
GTGACATACCTGTGGGAGACAGTTGCAACTAATTTCGAAGAATTTCAAGATGTTTCCGAGAAGCTCTTTACTAGCAAAAATAGAACAGAGGCTTCGTTGG
GGAAGAAATTAAAGAATGACATGCTTCCCGAGATTGAGAAGGTTTACAAGAGGAAAGAGAGGTTGCTGAAAAAGCAACATAGGCAGGCTTTACTTCTTGA
TAATTTCTTGAACATAGATGGACTTGCACCAGGACGTTCACTCCGTGATAGAAAGCCTGTTACATATACTTTTGATGATTATGATCGGTCAATCAATGAG
GCTATCAAAATAACAAAGCGCAAACCACCATCCCCAGAACCTGTTCACAGGAGAGAAGGTTTTTCTAAACCTGAAGCTTCTACAAATGGTAAATGGAGTG
GTCCTTCACATGCATCGCAACATGGCACTTTCAGTGCTGCATCTCCTAATTCTCTTGATTACGATGACATGGATGAAGACCATAAATCTGAAGGTTTGGA
CCGGAGCAATAGACGAAGACAGAGGCCTCAACGGTATTCAGCAAAAGAGTTTGTTGAGGCAGTTTCAGATAACGAGGCAGACTTTGACAGTGATGATGAT
ATAGTTGGAGAAGCTGTCTATGATGATGAATACTTGAGGAAACGTAAGCAGAAGAGGCTGTCTAGCAGCTCCGAAGGGGATGAAGAGTATCAGTGGGATG
ATGAAAATGGTGAAGAGGAGGAGGAAGAAGACGAAGAAGAGGGTTCCTTGAGTGTCAGTGAGGATAGTGATGAGCCCCAAAAATTCAAGAAATTGCCAGG
GCGTACACGCAGGGAAACAAAATTAAGGTCTGTTGATGAGATCCAGTCAGGTCTTAGACGCAGTAGAAGAGCCACCCGAAACCAGATTAATTACCGACAA
TATGAGCTGTCTGAGTCAGAAACAGAGTCAATAAAACGCGAGAAATCAAATGCATCAGATGAGCACTCAGATGCAAGTGAGAATGGAGAGTATTCAGCCA
GAAGTCAAAGTGGAGATTCTGATGGCAATGATGATGAGCAAAATATGAAAGTTGATCAGCCTGTTGAAGGTGACACCGTGATAGCACGGGAAGAGCAAAA
TCAGCCGCCTGAGGAATCGAATAGCCCAGTCCAAGAAGAAGTTGAGGGTGTAAGAAAAAGACGTTTCCTTGATCTCAATGAACTTGCACCGGGTTCTGGT
TTTGATGATAGTCCAAACACGGTAATGAAAGATGAAGATAGAAATGATTTTTGA
AA sequence
>Potri.012G072200.1 pacid=42783611 polypeptide=Potri.012G072200.1.p locus=Potri.012G072200 ID=Potri.012G072200.1.v4.1 annot-version=v4.1
MSREQPSPSPISQNDAQTPLNDDAQAQSQSQTPPVNRSNRPSRACTIRAAARLQQQAVIERKQKPKKQEQQQQLDKSSVQQKEQCSGGSSKIVTQLVAPP
EPAQLPRWSLRSMWELASVLHFLNVFRHLLNITVEFSAEEFETALITPNDTLGDIHMPLLKAIPPVTRMALTRDTWVTVLCRKLRDWWHWVADGELPLVA
SHGVEVEVYKTLDPSVRVVILKALCDIRVEQEDIRNYIDNSLKHGIQLSLFRKERIGGDSQGINYWYEDDPTIGQRLYREIRKTEVKAKAKAKGSQIIPN
VTYLWETVATNFEEFQDVSEKLFTSKNRTEASLGKKLKNDMLPEIEKVYKRKERLLKKQHRQALLLDNFLNIDGLAPGRSLRDRKPVTYTFDDYDRSINE
AIKITKRKPPSPEPVHRREGFSKPEASTNGKWSGPSHASQHGTFSAASPNSLDYDDMDEDHKSEGLDRSNRRRQRPQRYSAKEFVEAVSDNEADFDSDDD
IVGEAVYDDEYLRKRKQKRLSSSSEGDEEYQWDDENGEEEEEEDEEEGSLSVSEDSDEPQKFKKLPGRTRRETKLRSVDEIQSGLRRSRRATRNQINYRQ
YELSESETESIKREKSNASDEHSDASENGEYSARSQSGDSDGNDDEQNMKVDQPVEGDTVIAREEQNQPPEESNSPVQEEVEGVRKRRFLDLNELAPGSG
FDDSPNTVMKDEDRNDF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G18950 DDT domain superfamily (.1) Potri.012G072200
[exp]
0 1
AT5G58040 FIP1[V], ATFIP1... homolog of yeast FIP1 [V], hom... Potri.006G187400
[exp]
1.41 0.9020
AT3G05380 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EA... Potri.013G020500
[exp]
1.41 0.9183
AT3G08020 PHD finger family protein (.1) Potri.009G059500
[exp]
1.73 0.8999
AT2G45880 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7... Potri.014G083700
[exp]
2.82 0.8990
AT5G44800 PKR1, CHR4, MI-... PICKLE RELATED 1, chromatin re... Potri.003G110100
[exp]
5.09 0.8800
AT2G03140 alpha/beta-Hydrolases superfam... Potri.006G136900
[exp]
5.83 0.8735
AT4G13730 Ypt/Rab-GAP domain of gyp1p su... Potri.017G057100
[exp]
6.92 0.8800
AT2G31260 ATAPG9, APG9 autophagy 9 (APG9) (.1) Potri.002G039900
[exp]
7.74 0.8947 APG9.1
AT4G36650 ATPBRP plant-specific TFIIB-related p... Potri.007G027600
[exp]
8.06 0.8984
AT4G31430 unknown protein Potri.006G275200
[exp]
8.83 0.8570

Potri.012G072200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.