Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62620 904 / 0 Galactosyltransferase family protein (.1.2) AT1G74800 867 / 0 Galactosyltransferase family protein (.1) AT1G27120 734 / 0 Galactosyltransferase family protein (.1) AT4G21060 644 / 0 Galactosyltransferase family protein (.1.2) AT3G06440 316 / 2e-98 Galactosyltransferase family protein (.1.2) AT1G26810 310 / 7e-96 GALT1 galactosyltransferase1 (.1) AT3G14960 68 / 7e-12 Galactosyltransferase family protein (.1) AT1G53290 66 / 2e-11 Galactosyltransferase family protein (.1) AT2G26100 59 / 6e-09 Galactosyltransferase family protein (.1) AT1G05170 47 / 3e-05 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G067600 [exp] 1112 / 0 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 832 / 0 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 696 / 0 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 690 / 0 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G168500 [exp] 318 / 6e-99 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.010G151600 [exp] 315 / 7e-98 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.008G086900 [exp] 315 / 9e-98 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.001G392700 [exp] 69 / 2e-12 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.011G111700 [exp] 64 / 1e-10 AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042164 [exp] 968 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10004256 [exp] 966 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 844 / 0 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036686 [exp] 716 / 0 AT5G62620 743 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 674 / 0 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10030467 [exp] 329 / 1e-103 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10012822 [exp] 324 / 4e-101 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 316 / 4e-98 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 310 / 6e-97 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10032650 [exp] 303 / 3e-93 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00337 [poplar] [flax] Gal-bind_lectin Galactoside-binding lectin CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.012G072400.1 pacid=42784337 polypeptide=Potri.012G072400.1.p locus=Potri.012G072400 ID=Potri.012G072400.1.v4.1 annot-version=v4.1 ATGAAGAGAGGCAAATCGGATACCAAATTGGACAAATTAGATAGGTTTGTGTCATTAAGCAGGCAAAAATCCGTTCAAATCCTTCTTGCTCTTGCTGTTA TCTACATGCTCCTTGTCACTCTTGAAATCCCTTTTGTTTTCGACTCTGGCCCCACCTCTGAAACCACCACCACCACCCCCACCCCCACCCTCGCTGGCTT TTCTGAGCTTCAAAGCGAACAAGTTTTGCAAGATAAAGATGCCCCAACTCGACCTCTTAACTGGGTTTCTCATAACTTTTCCCGCCCTTCTCAATCTCAA CTTGATGCGAGCAAAATCTTGTCCTCTTTGGGTTTCCACCCTGAGACCTTGGATCCCACTAAGAAAGACGGCTCCGTCGACCTCCATAAAGCTGCAAAGA CTGCTTGGGAGGAGGGGATAAAGTTATGGGATGAAGTTCAATCTGGTAAAGTTAAACTTTTGGAGGTTTCAAACCTCAAGAATATATCCGAACCCTGTCC CATTTCGGTTACGCTATCTGGGTCGGATTTTTTGAAGCGAAGCAAGTTGTTGGAGTTGCCTTGTGGGCTCACTTTGGGATCACATATAACGCTGGTGGGC AAGCCAAGAGCAGCACATGCTGAGAAGGACCCCAAGATTGCCTTGGTGAAGGAAGCAGACGACGAGGTGATGGTTTCCCAGTTCATAATGGAATTGCTGG GATTGAAGACTGTGGAGGCTGAGGACCCACCAAAGATTCTTCATTTCAATCCCAGGTTGAAAGGGGATTGGAGTTTGAAGCCTGTAATTGAGCAGAATAC TTGTTATAGAATGCAGTGGGGGACTGCTTTGCGTTGCGAGGGATGGGGGTCTGAGGTTGATGAGGAGACTGTTGATGATCAAGTGCAGTGTGAGAAGTGG ATCCGTGATGATGATGATATATCAGAGGAGTCTAAGGCAAATTTGTGGTTGAACCGGCTAATAGATCAAACAAAAAAGGTGACTTTTGACTGGCCATTTC CTTTTGCAGAGGAGAAACTGTTTGTCCTAACTCTGAGTGCTGGTTTGGAGGGTTACCATGTTAATGTTGATGGGAGGCATGTCACTTCTTTCCCTTATCG AACTGGATTTACTCTTGAGGATGCAACGGGGTTAGCTGTTACTGGGGACATAGATGTTCACTCTGTATTTGCTGCTTCATTGCCCTCGAATCACCCTGGT TTTTCTCTTCACAGGCATCTGCAGATGTCTAGCAGATGGAAGGCACCATCTCTTTCTGTGGGGTCAGTGGAACTTTTTATCGGTGTTCTCTCTGCAGCTA ACCATTTTGCTGAGCGAATGGCTGTTAGGAAGTCTTGGATGCAGCATAGGCGTATAAAATCATCAAATGTGGTAGCTCGTTTCTTTGTAGCCCTGCACAC TCGAAAGGAAGTGAATTTAGAGTTAAAGAAAGAGGCTGAATATTTTGGTGATATTGTCGTAGTGCCTTACATGGATAACTATGATCTTGTGGTGTTGAAA ACTGTTGCCATTTGTGAATATGGGGTCCGCACAGTGCGTGCAAAATATATTATGAAGGGTGATGATGATACATTTGTGAGAGTGGATTTCATTATAGATG AAGTAAATAAAGTTCCTGCTGGTAGGAGCTTGTACATTGGAAACATAAATTACTACCATAAGCCCTTGCGATATGGTAAATGGGAAGTGACATATGAGGA ATGGCCAGAAGAAGATTATCCACCCTATGCAAATGGGCCAGGCTACATTTTATCTCCTGACATTGCGTGCTTCATTGTTTCTGAGTTTGAGAGTCATAAA TTAAAGTTGTTCAAGATGGAAGATGTCAGTATGGGAATGTGGGTAGAGCAGTTCAATCGCTCAAGACCTGTGGAGTATGTGCACAGCTTGAAGTTCTGCC AGTTCGGATGTATTGAAGGTTATTATACGGCTCATTACCAGACCCCCAGGCAAATGATCTGCCTTTGGGAAAAATTACAAAAGCAGGGAAGGGCTCAGTG CTGCAATGAGATAATGATCAGGACTTCAGTCAATGAGAGGCCCAAGTGCCGGAATAGGGAGAGGATGATCACTAGATTTGGTGAAATGAGGACTGGATCA TGGATGAGAGTCACTACCTGGGGTGACTGTCCTGAAAAACTCAAGATATAA
AA sequence Show only first row Show all	>Potri.012G072400.1 pacid=42784337 polypeptide=Potri.012G072400.1.p locus=Potri.012G072400 ID=Potri.012G072400.1.v4.1 annot-version=v4.1 MKRGKSDTKLDKLDRFVSLSRQKSVQILLALAVIYMLLVTLEIPFVFDSGPTSETTTTTPTPTLAGFSELQSEQVLQDKDAPTRPLNWVSHNFSRPSQSQ LDASKILSSLGFHPETLDPTKKDGSVDLHKAAKTAWEEGIKLWDEVQSGKVKLLEVSNLKNISEPCPISVTLSGSDFLKRSKLLELPCGLTLGSHITLVG KPRAAHAEKDPKIALVKEADDEVMVSQFIMELLGLKTVEAEDPPKILHFNPRLKGDWSLKPVIEQNTCYRMQWGTALRCEGWGSEVDEETVDDQVQCEKW IRDDDDISEESKANLWLNRLIDQTKKVTFDWPFPFAEEKLFVLTLSAGLEGYHVNVDGRHVTSFPYRTGFTLEDATGLAVTGDIDVHSVFAASLPSNHPG FSLHRHLQMSSRWKAPSLSVGSVELFIGVLSAANHFAERMAVRKSWMQHRRIKSSNVVARFFVALHTRKEVNLELKKEAEYFGDIVVVPYMDNYDLVVLK TVAICEYGVRTVRAKYIMKGDDDTFVRVDFIIDEVNKVPAGRSLYIGNINYYHKPLRYGKWEVTYEEWPEEDYPPYANGPGYILSPDIACFIVSEFESHK LKLFKMEDVSMGMWVEQFNRSRPVEYVHSLKFCQFGCIEGYYTAHYQTPRQMICLWEKLQKQGRAQCCNEIMIRTSVNERPKCRNRERMITRFGEMRTGS WMRVTTWGDCPEKLKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62620			Galactosyltransferase family p...		Potri.012G072400 [exp]	0	1
AT1G28320		DEG15	protease-related (.1)		Potri.011G056100 [exp]	1.41	0.9193
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Potri.009G149100 [exp]	1.73	0.9198
AT1G73210			Protein of unknown function (D...		Potri.004G068700 [exp]	2.23	0.9081
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	2.82	0.9123
AT5G65685			UDP-Glycosyltransferase superf...		Potri.007G009600 [exp]	3.46	0.9010
AT1G21650		SECA2	Preprotein translocase SecA fa...		Potri.002G078000 [exp]	6.00	0.8930
					Potri.018G145600 [exp]	9.38	0.8985
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Potri.019G100800 [exp]	11.48	0.9168	Pt-RMA1.1
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144700 [exp]	12.72	0.8847
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Potri.002G193900 [exp]	13.22	0.8786

Compare expression of checked genes

Potri.012G072400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.