Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47850 129 / 2e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004255 [exp] 223 / 8e-70 AT3G47850 216 / 2e-67 unknown protein Lus10042163 [exp] 217 / 1e-67 AT3G47850 215 / 4e-67 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G072600.1 pacid=42782583 polypeptide=Potri.012G072600.1.p locus=Potri.012G072600 ID=Potri.012G072600.1.v4.1 annot-version=v4.1 ATGGTGGCGATATCGCTGTACAGAGGGAATTTGCACAGCGTAGCAGACGTCCCTCGTCGATGGCTAATGCCTACCCCCAAGATTTCTCCCAGAGACTTCA AAACCCTTTGCCACCGCCGTTCCAAAGCTCTCTGTCGCCTCCGCTCCACCACCACTTCAAACCCTAATTCAAATCACATTGAGAAAGCCCCAATTGAACC TAAATTGGAAGCAGTAGAAGAAGAGATTGTTGCAAATAATAATGGTAAAGAAGCAGAACAAGCAGAAGATTGTAAAGGTGGAGGAGATGGAGGAGCTTCT AGTTCTAGAGAGGATGAAAAGGATGATGTTGGGTTGGACGGCGCTGATTTCTCCATGAAGCCCGCTGATGATGCAGTTAATGGTGATCCGAATCCAAATA ACTTGCAAAAACCTGACGACGTAGCTAATAACCCTAGTGTGGAGACAAAGAGCAATGCAAATGAATTAGATGAAGAAAAAGAGAAAAGGAAGAGAGAAAT CGAGGACAAGTTACAAGTTTTAAATGCAAAGAAGCATAACCTTGTAAAAGCGTTGAAGCAGATCTTGAATGTGGAGGAAGAATTAAAGAGAAGAAATAGT ACTCAAGGGATGCCGGTTCGCCCTTCCGTTCAACTTCAAGTGGATGTCTCAAATGACTCTGGATCGATGACTAGGCATCCTACTCCTAGGATGGGCTCTG AGGCAAATCCTGGTGGTGATATAGAAGGGGGAGAAGCTGAAGATATTTCAAATCATAACACTCATTCACGTCATGTACATAGAATGAGCAGTACATCTCC TTCTCCCTCATCCGAGTCTCCTCTTAGAAGGCCTCCCTATATTCAGCCCAATGTGGTTCCACACCCCTCTAGATCTGGTTTGGGAACCTCTGGTAGTCCA TCACGATTTGCTCCAATGGGGCACCATGGACATCCTTTAAACTTACCTACATTGTCTGTATCAGGCACATATTATGCCGCATCCTCTCCTTCCCCTTCCC CAGCAGCATCTGGTGGTACTTCAGCTTTTAAAGATGCTAGGCATCCAAGTCCATGGAATTAG
AA sequence Show only first row Show all	>Potri.012G072600.1 pacid=42782583 polypeptide=Potri.012G072600.1.p locus=Potri.012G072600 ID=Potri.012G072600.1.v4.1 annot-version=v4.1 MVAISLYRGNLHSVADVPRRWLMPTPKISPRDFKTLCHRRSKALCRLRSTTTSNPNSNHIEKAPIEPKLEAVEEEIVANNNGKEAEQAEDCKGGGDGGAS SSREDEKDDVGLDGADFSMKPADDAVNGDPNPNNLQKPDDVANNPSVETKSNANELDEEKEKRKREIEDKLQVLNAKKHNLVKALKQILNVEEELKRRNS TQGMPVRPSVQLQVDVSNDSGSMTRHPTPRMGSEANPGGDIEGGEAEDISNHNTHSRHVHRMSSTSPSPSSESPLRRPPYIQPNVVPHPSRSGLGTSGSP SRFAPMGHHGHPLNLPTLSVSGTYYAASSPSPSPAASGGTSAFKDARHPSPWN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47850			unknown protein		Potri.012G072600 [exp]	0	1
AT5G59900			Pentatricopeptide repeat (PPR)...		Potri.001G236800 [exp]	2.44	0.7334
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Potri.005G226500 [exp]	17.83	0.7210
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Potri.008G005101 [exp]	26.98	0.6543
AT5G16610			unknown protein		Potri.017G130400 [exp]	36.74	0.6738
					Potri.008G009201 [exp]	37.70	0.6455
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.014G076600 [exp]	39.11	0.7083
AT5G42440			Protein kinase superfamily pro...		Potri.005G195500 [exp]	48.06	0.6175
AT5G64420			DNA polymerase V family (.1)		Potri.009G079900 [exp]	50.64	0.6906
AT4G03000			RING/U-box superfamily protein...		Potri.010G027900 [exp]	56.67	0.6469
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.015G089100 [exp]	76.34	0.6517

Compare expression of checked genes

Potri.012G072600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.