Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62610 228 / 4e-74 bHLH bHLH079 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 193 / 1e-60 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT1G26260 129 / 4e-35 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G07340 130 / 5e-35 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 130 / 1e-34 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23690 125 / 2e-33 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 125 / 6e-33 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G34530 119 / 1e-31 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT4G36540 119 / 1e-31 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2) AT5G50915 118 / 1e-31 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G068100 [exp] 406 / 1e-144 AT5G62610 263 / 7e-88 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G040000 [exp] 206 / 2e-66 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2) Potri.008G190800 [exp] 204 / 5e-65 AT1G59640 230 / 2e-75 BIG PETAL UB, BIG PETAL P (.1.2) Potri.002G248500 [exp] 134 / 1e-35 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 131 / 1e-34 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 127 / 4e-33 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 126 / 5e-33 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.008G113200 [exp] 126 / 7e-33 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.006G057200 [exp] 122 / 1e-32 AT3G57800 280 / 2e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033120 [exp] 302 / 1e-103 AT5G62610 265 / 9e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10036659 [exp] 290 / 2e-98 AT5G62610 256 / 3e-85 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013284 [exp] 222 / 3e-72 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2) Lus10030807 [exp] 220 / 3e-71 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2) Lus10029110 [exp] 139 / 9e-38 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 138 / 3e-37 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10003172 [exp] 127 / 1e-34 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021968 [exp] 125 / 4e-34 AT3G23690 163 / 5e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041261 [exp] 124 / 7e-34 AT3G23690 172 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030581 [exp] 130 / 8e-34 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G072700.1 pacid=42784105 polypeptide=Potri.012G072700.1.p locus=Potri.012G072700 ID=Potri.012G072700.1.v4.1 annot-version=v4.1 ATGGATCCTCCATTGATAAACGAGAAGTCCTTCTCTGCGGCCAACCCATCTTCCTACTCATTAACTGAGATTTGGCCTTTTCCTCCTCCTTCTTCAACTG CTTTGGGCCTCCGGATGGCTAATTTGGCCGACCGAGATGGGTCCGTTGACGAATCCACTGTGACCGAGCAGAGGGGTGGAAATAGAAATGGAAATAGGAA GGCTAGAGATTTGAGTTCCGAGGAGGATGACTCATCCATAATGGTTTCTACCACCACTAGTGCCCATGATTTGAATGATTTGAATGGTAAGCGGAGGAAA ATTTCGGGGTCAAGGAATGAAAACAATGATTCAAGAGCTGAAATAGAAGCAAGTTCTGCTGCTAATAACAAGCCAGCTGAACCAAGCAGTAAACCATCTG AGCCGCCTATGCAAGACTATATTCATGTCAGATCAAGAAGGGGCCAAGCGACTGATAGCCACAGTTTAGCAGAGAGAGCTCGGAGAGAGAGGATTGGTGA GAGGATGAAGATACTCCAAGATTTGGTCCCTGGGTGTAATAAGGTCATTGGTAAAGCACTTGCCCTTGATGAGATAATTAATTACATCCAGTCACTCCAG TGTCAGGTTGAGTTCCTCTCAATGAAGCTAGAAGCAGTAAATTCAAGGATGAGCACGAGCCCCGCGATTGAAGGCCTTCATCCAAAAGACCTTGGTGCAC AGCCATTTGATGCTACTGGAATGATATTTGGCCCACAACCAACAAGAGACTATGTTCAAGGATCCCAACCGGAATGGCTACATATGCAGGTTGGTGGAAG TTTTAAAAGAGCCACGTAA
AA sequence Show only first row Show all	>Potri.012G072700.1 pacid=42784105 polypeptide=Potri.012G072700.1.p locus=Potri.012G072700 ID=Potri.012G072700.1.v4.1 annot-version=v4.1 MDPPLINEKSFSAANPSSYSLTEIWPFPPPSSTALGLRMANLADRDGSVDESTVTEQRGGNRNGNRKARDLSSEEDDSSIMVSTTTSAHDLNDLNGKRRK ISGSRNENNDSRAEIEASSAANNKPAEPSSKPSEPPMQDYIHVRSRRGQATDSHSLAERARRERIGERMKILQDLVPGCNKVIGKALALDEIINYIQSLQ CQVEFLSMKLEAVNSRMSTSPAIEGLHPKDLGAQPFDATGMIFGPQPTRDYVQGSQPEWLHMQVGGSFKRAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Potri.012G072700 [exp]	0	1
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Potri.016G038500 [exp]	3.74	0.8315
					Potri.002G048101 [exp]	12.48	0.8170
AT3G13550		EMB144, COP10, ...	FUSCA 9, EMBRYO DEFECTIVE 144,...		Potri.001G089300 [exp]	16.73	0.8018
AT2G28605			Photosystem II reaction center...		Potri.007G100800 [exp]	20.29	0.8203
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.005G057000 [exp]	21.90	0.7623
AT3G01510		LSF1	like SEX4 1 (.1)		Potri.001G349000 [exp]	27.05	0.8072
AT4G39630			unknown protein		Potri.007G085100 [exp]	31.98	0.7594
AT3G57280			Transmembrane proteins 14C (.1...		Potri.003G094300 [exp]	37.14	0.7961
AT1G76050			Pseudouridine synthase family ...		Potri.002G016800 [exp]	44.27	0.8002
AT5G53850			haloacid dehalogenase-like hyd...		Potri.001G399000 [exp]	63.98	0.7525

Compare expression of checked genes

Potri.012G072700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.