Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13050 310 / 5e-106 5-FCL 5-formyltetrahydrofolate cycloligase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004254 [exp] 347 / 3e-120 AT5G13050 296 / 1e-100 5-formyltetrahydrofolate cycloligase (.1.2) Lus10042162 [exp] 339 / 1e-116 AT5G13050 297 / 4e-100 5-formyltetrahydrofolate cycloligase (.1.2) Lus10010736 [exp] 265 / 4e-88 AT5G13050 276 / 8e-93 5-formyltetrahydrofolate cycloligase (.1.2) Lus10036681 [exp] 209 / 2e-67 AT5G13050 213 / 3e-69 5-formyltetrahydrofolate cycloligase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [poplar] [flax] ISOCOT_Fold PF01812 [poplar] [flax] 5-FTHF_cyc-lig 5-formyltetrahydrofolate cyclo-ligase family
Representative CDS sequence Show only first row Show all	>Potri.012G072800.3 pacid=42782518 polypeptide=Potri.012G072800.3.p locus=Potri.012G072800 ID=Potri.012G072800.3.v4.1 annot-version=v4.1 ATGTGGAGAAGTGGGCTTAGACAAAGGGTTAAGGAATTGTTAATGATTCTCCCACCTTGCTCATTTTTACCACCTTCTCCTTCACCTTCACAACGTTTTG CGTTCACCAAGAAGCCACTTCTAGGCCTAGCCAACGCTTCTCTGTGTTCGCCTGGCACAATGAGCACCGCCACCAATCTCGACGGAATATTCAAGCAGAA ACAGGTCCTTCGATCCAAAGTCCGCAAGTCCCTCAAGTCCATGGACCCTTCCCTCAGATCTCAAGAAGACGATGCAATTCAAAGTCTTGTTTTGGAAGCT CCATGGTTTAAATCTAGCCAGAGGCTGTGTGCTTATATAACTTGTAGTGCTCTGCGTGAAGTTGACACTTCAAAATTGTTGTCTCAAATCCTGCAAAATC CAACCAAAGATGGGTCAGTTGAGAATGCAAAAAAGCTTTATGTTCCGCGTGTGGAGGACAAGAATAGCCACATGCGAATGCTCAACATTTCAAGTATGGA TGATTTAATTGCAAACTCTATGGATATTCTAGAACCAGCTCCAGTAGATCAACATGGAAATGCACGGGAAGATGTTATGCAAGCAAATGACCCAGTTGAT TTGTTCCTCCTGCCTGGACTTGCATTTGACAAATCTGGAAGACGCTTGGGCCGTGGTGGAGGTTATTATGACACTTTCCTGAGGAAGTATCAAGAACTCG CAGAGGAGAGGGACTGGAGGCAACCCCTCTTAGTTGCACTTTCATATTCTCTGCAAATCATAGATGATGGAGCTATACCGGTAACTTTGAATGATTTACC GGTGGATGTTCTTGTGTCCCCAGCTGGTGTGATTCCCATTAGCCAAGCTGCCTTAAACAGAATGCAGATTTGA
AA sequence Show only first row Show all	>Potri.012G072800.3 pacid=42782518 polypeptide=Potri.012G072800.3.p locus=Potri.012G072800 ID=Potri.012G072800.3.v4.1 annot-version=v4.1 MWRSGLRQRVKELLMILPPCSFLPPSPSPSQRFAFTKKPLLGLANASLCSPGTMSTATNLDGIFKQKQVLRSKVRKSLKSMDPSLRSQEDDAIQSLVLEA PWFKSSQRLCAYITCSALREVDTSKLLSQILQNPTKDGSVENAKKLYVPRVEDKNSHMRMLNISSMDDLIANSMDILEPAPVDQHGNAREDVMQANDPVD LFLLPGLAFDKSGRRLGRGGGYYDTFLRKYQELAEERDWRQPLLVALSYSLQIIDDGAIPVTLNDLPVDVLVSPAGVIPISQAALNRMQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Potri.012G072800 [exp]	0	1
AT3G29010			Biotin/lipoate A/B protein lig...		Potri.017G085100 [exp]	11.44	0.7333
AT2G37975			Yos1-like protein (.1)		Potri.008G063000 [exp]	14.00	0.7886
AT2G14835			RING/U-box superfamily protein...		Potri.001G294200 [exp]	15.45	0.8356
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.002G027200 [exp]	20.49	0.7974	AVA.1
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Potri.001G031500 [exp]	23.23	0.7975	Pt-PNT1.1
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Potri.005G073000 [exp]	23.91	0.7620	Pt-ATGB3.3
AT1G09645			unknown protein		Potri.003G005400 [exp]	63.49	0.7793
AT3G24160		PMP	putative type 1 membrane prote...		Potri.001G049800 [exp]	73.84	0.7623	Pt-PMP.1
AT1G49140			Complex I subunit NDUFS6 (.1)		Potri.015G054700 [exp]	73.99	0.7491
AT5G53650			unknown protein		Potri.012G022900 [exp]	148.14	0.7423

Compare expression of checked genes

Potri.012G072800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.