Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28780 174 / 8e-52 PIF1 helicase (.1) AT3G51700 171 / 1e-50 PIF1 helicase (.1) AT3G51690 167 / 5e-49 PIF1 helicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G007400 [exp] 473 / 3e-169 AT5G28780 208 / 2e-65 PIF1 helicase (.1) Potri.008G167001 [exp] 454 / 2e-162 AT5G28780 220 / 2e-70 PIF1 helicase (.1) Potri.001G185950 [exp] 484 / 2e-160 AT5G28780 213 / 3e-61 PIF1 helicase (.1) Potri.009G002650 [exp] 395 / 3e-127 AT5G28780 154 / 1e-40 PIF1 helicase (.1) Potri.006G157501 [exp] 342 / 1e-113 AT5G28780 196 / 2e-57 PIF1 helicase (.1) Potri.001G165240 [exp] 346 / 8e-110 AT5G28780 171 / 1e-46 PIF1 helicase (.1) Potri.003G004501 [exp] 298 / 1e-100 AT5G28780 162 / 5e-48 PIF1 helicase (.1) Potri.011G042150 [exp] 265 / 3e-80 AT5G28780 174 / 1e-47 PIF1 helicase (.1) Potri.012G032376 [exp] 230 / 5e-68 ND /
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05970 [poplar] [flax] PIF1 PIF1-like helicase
Representative CDS sequence Show only first row Show all	>Potri.012G073100.2 pacid=42783903 polypeptide=Potri.012G073100.2.p locus=Potri.012G073100 ID=Potri.012G073100.2.v4.1 annot-version=v4.1 ATGAATAACAGATGTTGTTTTAAAGCCCTTGACCGTTCAATGCGTGATGTCCTCTCAGGGTGTGACAATTGTAGTCGAGATCTTTCATTTGGCGGTAAAA CAGTTTTGCTTGGCGGTGATTTTCGCCAAATATTGCCAGTTATTCCTGGTGGAACAAAAGAAGAGATAATTAATGTTTCTCTAAGCAGCTCAGCTTTATG GCCTAAATTTACTGTATTAACTCTTACAGAAAACATGCGCCTCTCTACTCATGGTCTGGCCGCTGAAGAAAGAACTAAAATCAGCGAATTTGCTAGGTGG ATTTTAAGCATTGGTAATGGTGATATCTCTGATTTACCTTTCTCTGGTGAGTTAGATGATTCTTTTATTAGTATTCCCTCATATCTACTCCTTCATACTT CATGTGATCCAATTCCAGCCATTGTCTCAGCAATTTATCCATCTATTTATGAGCCTCAAATGGACCCCTGCTATTTTAGAGAAAGAGCCATTCTAACACC GAAAAACACAACAGTTGCTGAAATTAATGATTTTGTGCTTGCTATGACACCCGGCAACAAACATATCTATCTTAGCATAGATTCTATTTCAACGTCATCA AGAGAGACTGACATTGCCAATTCATTATATCCAACAGAATATATCAACCAACTTGAATTCAATGGTGTGCCATCTCATACACTTGCTTTGAAAATCGGGA CACCAGTCATGTTGCTTAGAAATATCAACCCATCTATTAGTTTATGTAATGGGACAAGACTTATAGTGACGCAACTTTCAGCAAGAGTCATTGAAGCACA GATAATAACTGGGTCTAATATTGGTAATAGAGTTTTTATACCAAGAATTATCTTTCCAATAAATGAAGGAAGGTGTCCGTTTACGATAAAAAGACGTCAG TTTCCTTTAAGACTGTGTTACGCAATGACAATAAATAAAAGTAAAGGCCAATCATTAAAAACTGTTGGAGTCTTTCTTAAAGAACAAGTCTTCACTCATG GCTAG
AA sequence Show only first row Show all	>Potri.012G073100.2 pacid=42783903 polypeptide=Potri.012G073100.2.p locus=Potri.012G073100 ID=Potri.012G073100.2.v4.1 annot-version=v4.1 MNNRCCFKALDRSMRDVLSGCDNCSRDLSFGGKTVLLGGDFRQILPVIPGGTKEEIINVSLSSSALWPKFTVLTLTENMRLSTHGLAAEERTKISEFARW ILSIGNGDISDLPFSGELDDSFISIPSYLLLHTSCDPIPAIVSAIYPSIYEPQMDPCYFRERAILTPKNTTVAEINDFVLAMTPGNKHIYLSIDSISTSS RETDIANSLYPTEYINQLEFNGVPSHTLALKIGTPVMLLRNINPSISLCNGTRLIVTQLSARVIEAQIITGSNIGNRVFIPRIIFPINEGRCPFTIKRRQ FPLRLCYAMTINKSKGQSLKTVGVFLKEQVFTHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28780			PIF1 helicase (.1)		Potri.012G073100 [exp]	0	1
					Potri.004G151301 [exp]	3.31	0.7524
					Potri.011G164750 [exp]	4.24	0.7312
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G195150 [exp]	13.03	0.5971
					Potri.001G007232 [exp]	14.42	0.5778
AT5G12000			Protein kinase protein with ad...		Potri.006G225300 [exp]	14.96	0.5391
AT1G14200			RING/U-box superfamily protein...		Potri.011G119900 [exp]	21.56	0.5512
AT5G61630			unknown protein		Potri.001G080500 [exp]	28.98	0.4972
AT3G01430			unknown protein		Potri.001G132100 [exp]	32.52	0.4878
AT3G20190			Leucine-rich repeat protein ki...		Potri.014G002700 [exp]	33.48	0.4976
AT4G19110			Protein kinase superfamily pro...		Potri.016G012801 [exp]	35.00	0.4586

Compare expression of checked genes

Potri.012G073100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.