Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VFPP2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10430 605 / 0 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 599 / 0 PP2A-1 protein phosphatase 2A-2 (.1.2) AT1G69960 592 / 0 PP2A serine/threonine protein phosphatase 2A (.1) AT2G42500 537 / 0 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G58500 535 / 0 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT4G26720 433 / 5e-154 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT5G55260 431 / 2e-153 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT3G19980 373 / 3e-130 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT1G50370 369 / 4e-129 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G39840 290 / 3e-97 TOPP4 type one serine/threonine protein phosphatase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G068300 [exp] 639 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 608 / 0 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 605 / 0 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.003G217900 [exp] 541 / 0 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 540 / 0 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.016G062000 [exp] 536 / 0 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.006G196100 [exp] 533 / 0 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1) Potri.011G092200 [exp] 430 / 9e-153 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 427 / 1e-151 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042160 [exp] 639 / 0 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 630 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10036657 [exp] 621 / 0 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 617 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 617 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10004252 [exp] 550 / 0 AT1G69960 538 / 0.0 serine/threonine protein phosphatase 2A (.1) Lus10025174 [exp] 541 / 0 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10039185 [exp] 537 / 0 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016053 [exp] 534 / 0 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 524 / 0 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.012G073300.1 pacid=42783922 polypeptide=Potri.012G073300.1.p locus=Potri.012G073300 ID=Potri.012G073300.1.v4.1 annot-version=v4.1 ATGCCGTCTCACGTGGATCTGGACCGTCAGATCGAGCACTTGATGCAGTGCAAGCCGCTAGCTGAAGCAGAAGTTAAAGCACTGTGTGAGCAGGCCAGAG CGGTCCTTGTGGAGGAATGGAACGTTCAGCCTGTCAAATGTCCAGTAACTGTCTGCGGTGATATTCACGGTCAGTTCCATGATCTTGTCGAGCTCTTTCG CATCGGCGGTAACGCTCCTGACACTAATTACCTCTTCATGGGCGACTATGTAGATCGAGGATATTACTCTGTGGAGACTGTCACTCTTTTAGTGGCACTG AAAGTTCGATATAGAGACAGGATCACAATTCTAAGAGGAAATCATGAGAGTCGTCAAATAACTCAAGTGTATGGATTTTATGATGAATGCTTGAGGAAGT ATGGAAATGCCAATGTCTGGAAACATTTCACCGACCTCTTTGATTATCTCCCACTTACGGCCCTAATTGAGAGTCAGATCTTCTGCTTGCATGGTGGTCT TTCCCCATCTTTGGACACATTAGATAATATTCGTTCCCTGGACCGTATACAGGAGGTACCTCATGAGGGTCCAATGTGTGACCTCCTTTGGTCTGATCCG GATGATCGTTGTGGATGGGGAATTTCTCCTCGTGGGGCTGGATACACCTTTGGACAGGATATCTCTCAACAGTTCAATCACACTAATGGCCTTGCTCTCA TTTCTAGAGCTCACCAGCTTGTTATGGAAGGATACAATTGGTCCCAGGACAAGAATGTGGTGACAGTGTTCAGTGCGCCAAATTACTGCTATCGCTGTGG GAATATGGCTGCAATACTTGAGATAGGGGAGAATATGGAGCAGAATTTCCTTCAATTTGATCCAGCACCTCGACAGATTGAACCCGATACAACACGCAGA ACTCCTGACTATTTTTTATAA
AA sequence Show only first row Show all	>Potri.012G073300.1 pacid=42783922 polypeptide=Potri.012G073300.1.p locus=Potri.012G073300 ID=Potri.012G073300.1.v4.1 annot-version=v4.1 MPSHVDLDRQIEHLMQCKPLAEAEVKALCEQARAVLVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVAL KVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRSLDRIQEVPHEGPMCDLLWSDP DDRCGWGISPRGAGYTFGQDISQQFNHTNGLALISRAHQLVMEGYNWSQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPDTTRR TPDYFL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.012G073300 [exp]	0	1	Pt-VFPP2.1
AT4G35410			Clathrin adaptor complex small...		Potri.014G079000 [exp]	4.24	0.9476	AP19.1
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.005G010400 [exp]	4.24	0.9499
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.019G029200 [exp]	8.66	0.9351	VATE.1
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Potri.001G007800 [exp]	9.16	0.9211	PP2.4
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G080400 [exp]	10.81	0.9196
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.014G116500 [exp]	15.23	0.9299	Pt-ARF1.1
AT3G07950			rhomboid protein-related (.1)		Potri.008G041100 [exp]	17.17	0.9277
AT5G19050			alpha/beta-Hydrolases superfam...		Potri.008G202300 [exp]	18.57	0.9139
AT2G15240			UNC-50 family protein (.1)		Potri.009G095900 [exp]	19.59	0.9134
AT1G60970			SNARE-like superfamily protein...		Potri.003G043200 [exp]	20.78	0.9225

Compare expression of checked genes

Potri.012G073300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.