Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11010 480 / 2e-170 Pre-mRNA cleavage complex II protein family (.1.2.3) AT3G04680 67 / 7e-12 CLPS3 CLP-similar protein 3 (.1.2) AT5G39930 42 / 0.0004 CLPS5 CLP1-similar protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G077200 [exp] 66 / 2e-11 AT3G04680 655 / 0.0 CLP-similar protein 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033124 [exp] 580 / 0 AT5G11010 473 / 7e-168 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10036655 [exp] 572 / 0 AT5G11010 467 / 2e-165 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10014756 [exp] 544 / 0 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10033870 [exp] 164 / 9e-49 AT5G11010 142 / 9e-41 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10015355 [exp] 71 / 3e-13 AT3G04680 674 / 0.0 CLP-similar protein 3 (.1.2) Lus10007269 [exp] 69 / 1e-12 AT3G04680 571 / 0.0 CLP-similar protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF16575 [poplar] [flax] CLP1_P mRNA cleavage and polyadenylation factor CLP1 P-loop
Representative CDS sequence Show only first row Show all	>Potri.012G073500.1 pacid=42783422 polypeptide=Potri.012G073500.1.p locus=Potri.012G073500 ID=Potri.012G073500.1.v4.1 annot-version=v4.1 ATGGCTTCAATAACAGAAAGGGAAGAGGCATCACCAAGCATATATATATCAGAGGAATGGTCAGAGGCTGCCGACTCAGTAGCTTACGATTCCACCACTT CACCACCTCCTATTGCCCTTGTCTGTGGCCCCAAAAACTGTGGCAAAACCACCTTCTCTCGTTACCTTCTCAATATTCTTCTCCAAAGATATAAAAGGGT AGGTTATTTGGATACAGATGTTGGGCAGCCCGAGTTTACTACTCCTGGTTTTTTATCCCTCACTGTAGTTGACAAACTAACTCCAGATTTGACAATTCCA TGCTTGAAGACACCAGAGAGATGCTTTTTCTTTGGTGATGTTTCTTCGAAAAGAGATCCAACGGCTTATCTGAAATGTATATTTACCCTATATGATTATT ATCGGAAGGAGTACTGCAAGAGTGATAGCCCTGTGGAGAATGAAATGCCTCTTGTTGTAAACACACATGGTTGGGTAAAAGGAGTTGGTTATGATATATT GGTGGATATGTTGAGGCATATTGCCCCTACCCATGTGGTTAAGATAAACACAACTTCTGAGAGAAAGAATCTGCCAGGTGGGAAATTCTGGCTAGATGAG GGTTATGGTGGGCAGGTTAATCTAATTGATATCAATTCGACTCGTCACGACTCCTTCAATAGATCGGTTCTAATACAAAAGGATGCACGCCTTCTGCGGG ATTTACGAATAATGGCTTACTTCAGACAGTGTTTTCCGAGTAACCTGAATATCACCACAATCAAGGAACTTGCAAATGCTCTTGCCTCTCACCCTCCTTA TCAAGTCCCAATATCAAGCATCAAAATCAGACATCTCCATTCTCAGGTCCCACACACTGAAGTCTTCTACAGTTTGAATGCAACCATTGTTGGTTTAGCG GTTAGTTCTAAACAGCCAGAAAATATGCCATGGTGTGTTGGTCTTGGAATTGTTAGGGGAATCGATACATTCAAAGGTTTGCTCTACTTAATCTCGCCTG TGCCGCCAATCCTTCTGGAAAAGGTTGATCTTCTTCTGCAGGGATTTATCCATATTCCTACTTGCTTATTGCAGGTGCAGGGATGCATGTCGCCTTACAT GTCTGGGAATGTTTTGGCTACAAGCTAA
AA sequence Show only first row Show all	>Potri.012G073500.1 pacid=42783422 polypeptide=Potri.012G073500.1.p locus=Potri.012G073500 ID=Potri.012G073500.1.v4.1 annot-version=v4.1 MASITEREEASPSIYISEEWSEAADSVAYDSTTSPPPIALVCGPKNCGKTTFSRYLLNILLQRYKRVGYLDTDVGQPEFTTPGFLSLTVVDKLTPDLTIP CLKTPERCFFFGDVSSKRDPTAYLKCIFTLYDYYRKEYCKSDSPVENEMPLVVNTHGWVKGVGYDILVDMLRHIAPTHVVKINTTSERKNLPGGKFWLDE GYGGQVNLIDINSTRHDSFNRSVLIQKDARLLRDLRIMAYFRQCFPSNLNITTIKELANALASHPPYQVPISSIKIRHLHSQVPHTEVFYSLNATIVGLA VSSKQPENMPWCVGLGIVRGIDTFKGLLYLISPVPPILLEKVDLLLQGFIHIPTCLLQVQGCMSPYMSGNVLATS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11010			Pre-mRNA cleavage complex II p...		Potri.012G073500 [exp]	0	1
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G067200 [exp]	7.74	0.7582	PRMT901
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.010G014600 [exp]	8.36	0.7227
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	15.03	0.7756
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.014G047200 [exp]	19.77	0.7120
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Potri.005G152200 [exp]	23.21	0.7217
AT2G40780			Nucleic acid-binding, OB-fold-...		Potri.019G061200 [exp]	27.27	0.7420
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Potri.010G229800 [exp]	33.04	0.7169
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G075900 [exp]	35.44	0.7205
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Potri.017G099200 [exp]	37.88	0.6882
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Potri.002G225800 [exp]	38.20	0.7057

Compare expression of checked genes

Potri.012G073500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.