Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62600 1450 / 0 MOS14 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) AT1G12930 108 / 8e-24 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G068600 [exp] 1791 / 0 AT5G62600 1454 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Potri.014G141100 [exp] 114 / 1e-25 AT1G12930 1258 / 0.0 ARM repeat superfamily protein (.1) Potri.013G088600 [exp] 53 / 1e-06 AT5G17020 1924 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Potri.019G052100 [exp] 50 / 8e-06 AT5G17020 1919 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042159 [exp] 1510 / 0 AT5G62600 1352 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Lus10004250 [exp] 1454 / 0 AT5G62600 1296 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Lus10041503 [exp] 126 / 2e-29 AT1G12930 558 / 0.0 ARM repeat superfamily protein (.1) Lus10012590 [exp] 116 / 4e-26 AT1G12930 1148 / 0.0 ARM repeat superfamily protein (.1) Lus10020393 [exp] 47 / 6e-05 AT5G17020 1878 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10009572 [exp] 47 / 0.0001 AT5G17020 1860 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08389 [poplar] [flax] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Potri.012G073600.2 pacid=42782666 polypeptide=Potri.012G073600.2.p locus=Potri.012G073600 ID=Potri.012G073600.2.v4.1 annot-version=v4.1 ATGGAGCTTCAAAATTCAGTGAAGGAAGCTCTAAACGCACTGTACCATCATCCAGACGATGCGTTTCGTATGGAAGCCGATCGATGGCTACAAAACTTTC AGCGCACAATCGATGCCTGGCAGGTCGCTGATAATTTGCTTCACGATGCCACTAGCAATCTGGAAACCTTAATATTCTGTTCTCAAACCCTAAGAAGCAA GGTACAACGAGATTTTGAAGAACTGCCCTCTGAAGCCTTTCGACCATTGCGTACTTCCTTAAATACCTTGTTAAAAAAATTTCATAGAGGCCCCCCTAAA GTCAGGACTCAGATTAGCATTGCTGTGGCTGCCTTGGCTGTACAAGTTCCTCCTGAGGATTGGGGGGATGGTGGTATTGTAAATTGGCTCAAGGATGAGA TGACTTCACATCCAGAATATATTCCAGGATTTCTGGAGCTGCTTACAGTTTTACCAGAGGAAGTATTCAACTACAAGATAGCTGCTCGTCCAGAAAGACG CCGCCAATTTGAGAAAGAGCTCACTTCTCAAATAGAAGTCGCTCTTAATATTTTGACAGCTTGCTTGAAAATAAGTGAGCTAAAGGAGCAGGTTCTTGAG GCATTTGCTTCTTGGCTTCGACTAAGGCATGGGATCCCTGGTTCCTTGCTTGCCTGTCATCCATTGGTGCATACAGCTCTATCAAGTTTGAATTCTGAGA TACTTTCAGAGGCAGCTGTAAATGTCATATCAGAATTAATACATTACACAACAGCTGGAAACTCTGGTGGTATTCCTGTACAGATGCCTTTAATTCAAGT GATTGTGCCTCAAGTCATGAGTCTAAAGGAGCAACTCAGAGATCCTTCAAAGGATGAAGAAGATGTGAAGGCCATTGCTAGATTATTTGCAGACATGGGT GATTCATATGTCGAGCTGATTGCAACTGGTTCTAATGAGTCAATGATGATAGTAAATGCATTGTTAGAAGTTGCTTCACACCCAGAATATGACATTGCTT CAATGACATTTAATTTCTGGCACAGTCTTCAACATTTCTTGACTAAGAGGGATTCCTATACTTCATTTGGTAATGAAGCATCCATTGAAGCTGAGAGTAG GAGGAGGCTGCAAGTTTTTCGGTCACCCTATGAGTCCCTTGTGTCCCTGGTTAGCTCTCGAGTTCAATATCCTCCAGATTATCAAACCCTGTCAGTTGAA GATCTCAAGGAATTCAAACAGACTAGATATGCTGTCGCGGATGTGTTAATTGACGCAGCATCAGTTTTAGGCGGTGATGCAACCTTGAGAATTCTTTACG TAAAACTTGCTGAGGCCCGAACCTGCCTGGGGAATGACCACAATCAATGGCATCCAGCAGAAGCAGCTTTGTTTTGCATCAGGGCCATATCAAATTATGT TTCGACAGTTGAAGCTGAAGTAATGCCCAAGATTATGTCTTTGCTTCTGGAACTTCCTCATGAGCCCCAACTGCTCCAGACAGTGTGCTTAACCATTGGA GCATATTCGAAATGGCTTGATGCTGCATTGGATGGATTTCCTCAACTGTCTTCAGTCATAAAAATTCTCCTCAGTGGCATGGGTAAATCAGAAGATTCTG CAGCAGCTGCGGCAGTGGCATTCAGACACATCTGTGATGATTGCCGGAGAAAGCTTTGTGGATATTTTGACGAACTCTTTTCCATATACAACAGTGCTGT GATTGGGGAAGGTAGTTTGAAAGTTTCTGCTGGGGACTCTTTGCATGTGGTCGAAGCCTTCAGCATGGTCATTACAGAACTTCCTGCTGATCAGGCTAAG CTGGCTTTGGAGAAATTATGCTTGCCAGTTGTCACTCCTCTACAGGAAATTATTAGTCAAGGCCCAGATGTATTGGAGAAGAAACTTGCTCGTGAATTAA CAGTTCATATTGATCGACTTGCATACATCTTTAGGTATGTAAATCACCCTGAAGCTGTGGCAGATGCAATTCAAAGACTTTGGCCAATTTTGAAAGCAAT CTTTGACATTCGTGCTTGGGATATGCGGACAATGGAGTCTCTTTGCCGAGCTTGTAAATATGCTGTGAGAACATCTGGAAGGCTCATGGGAATCACAATT GGAGCAATGCTAGAAGAGATTCAAGGCCTGTACCAACAGCACCACCAGCCATGCTTCCTTTATCTCTCCAGTGAAGTTATAAAGATATTTGGCTCTGACC CATCTTGTGCGTACTACCTGAAAAATTTGATTGAAGCCCTCTTCAAGTGCACAACATGTCTTCTCACCAATATAAAGGATTTTACTGCCAGACCAGACAT AGCAGATGATTGTTTTCTGTTGGCATCGAGGTGCATCCGCTATTGCCCTCAAGTATTTATTCCATCTGCGGTATTCCCATCATTAGTGGATTGCTCAATG ATTGGTGTCACAGTACAACACAGAGAGGCCTCCAATTCCATATTAACTTTCCTGTCAGATATCTTTGATCTTGCAAAGTCTAGCATGGGAGAACAATATT TAACTATCAGAGACAGCGTCATTATTCCCCGGGGCTCCAGTATAACCAGAATTTTGGTTGCCTCCTTAACCGGAGCACTCCCAAGTTCTCGATTAGAAAC GGTAACATACGCTTTGCTAGCACTAACCCGTGCATATGGAGCAAGTGCATTGGAGTGGGCTAGGGAGAGTGTTTCTTTAATTCCATCAACCGTGGTCACA GAAGTGGAACAAACAAAGATCTTTCAAGCACTGACTGACGCAGCATCTGGGGTTGATATCAAAACCCTGATGGGTGCGGTTGAGGAGCTTTCTGATGTTT GTCGGCGGAATAGAACAGTCCAGGAGATTGTTCAAGGAGCTTTAAGGCCACTTGAGTTGAATTTGGTGACTGTATCATAG
AA sequence Show only first row Show all	>Potri.012G073600.2 pacid=42782666 polypeptide=Potri.012G073600.2.p locus=Potri.012G073600 ID=Potri.012G073600.2.v4.1 annot-version=v4.1 MELQNSVKEALNALYHHPDDAFRMEADRWLQNFQRTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDFEELPSEAFRPLRTSLNTLLKKFHRGPPK VRTQISIAVAALAVQVPPEDWGDGGIVNWLKDEMTSHPEYIPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQIEVALNILTACLKISELKEQVLE AFASWLRLRHGIPGSLLACHPLVHTALSSLNSEILSEAAVNVISELIHYTTAGNSGGIPVQMPLIQVIVPQVMSLKEQLRDPSKDEEDVKAIARLFADMG DSYVELIATGSNESMMIVNALLEVASHPEYDIASMTFNFWHSLQHFLTKRDSYTSFGNEASIEAESRRRLQVFRSPYESLVSLVSSRVQYPPDYQTLSVE DLKEFKQTRYAVADVLIDAASVLGGDATLRILYVKLAEARTCLGNDHNQWHPAEAALFCIRAISNYVSTVEAEVMPKIMSLLLELPHEPQLLQTVCLTIG AYSKWLDAALDGFPQLSSVIKILLSGMGKSEDSAAAAAVAFRHICDDCRRKLCGYFDELFSIYNSAVIGEGSLKVSAGDSLHVVEAFSMVITELPADQAK LALEKLCLPVVTPLQEIISQGPDVLEKKLARELTVHIDRLAYIFRYVNHPEAVADAIQRLWPILKAIFDIRAWDMRTMESLCRACKYAVRTSGRLMGITI GAMLEEIQGLYQQHHQPCFLYLSSEVIKIFGSDPSCAYYLKNLIEALFKCTTCLLTNIKDFTARPDIADDCFLLASRCIRYCPQVFIPSAVFPSLVDCSM IGVTVQHREASNSILTFLSDIFDLAKSSMGEQYLTIRDSVIIPRGSSITRILVASLTGALPSSRLETVTYALLALTRAYGASALEWARESVSLIPSTVVT EVEQTKIFQALTDAASGVDIKTLMGAVEELSDVCRRNRTVQEIVQGALRPLELNLVTVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Potri.012G073600 [exp]	0	1
AT3G05340			Tetratricopeptide repeat (TPR)...		Potri.013G021100 [exp]	2.64	0.8002
AT4G11160			Translation initiation factor ...		Potri.001G095500 [exp]	6.63	0.7591
AT1G20370			Pseudouridine synthase family ...		Potri.005G247000 [exp]	13.96	0.7464
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	15.96	0.6944
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G187800 [exp]	18.49	0.7342
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	22.44	0.7140
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Potri.001G016200 [exp]	26.26	0.6461
AT1G24510			TCP-1/cpn60 chaperonin family ...		Potri.010G051700 [exp]	31.17	0.6535
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Potri.001G267400 [exp]	39.11	0.7100	HF.1
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Potri.005G059700 [exp]	40.55	0.7249

Compare expression of checked genes

Potri.012G073600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.