Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CCSPK5.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08720 483 / 2e-168 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 464 / 4e-161 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT5G62310 233 / 3e-67 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G04510 215 / 7e-65 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2) AT5G09890 216 / 4e-64 Protein kinase family protein (.1.2) AT1G48490 224 / 7e-64 Protein kinase superfamily protein (.1.2.3) AT1G45160 223 / 9e-64 Protein kinase superfamily protein (.1.2) AT3G17850 223 / 1e-63 Protein kinase superfamily protein (.1) AT3G10540 213 / 2e-63 3-phosphoinositide-dependent protein kinase (.1) AT2G20470 212 / 3e-62 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109600 [exp] 488 / 1e-170 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 481 / 1e-167 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G044700 [exp] 224 / 4e-64 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.002G263000 [exp] 223 / 1e-63 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G127800 [exp] 223 / 1e-63 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.015G129200 [exp] 223 / 2e-63 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.014G028900 [exp] 212 / 1e-62 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2) Potri.015G035600 [exp] 220 / 2e-62 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.008G167800 [exp] 211 / 6e-62 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033125 [exp] 592 / 0 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10036653 [exp] 556 / 0 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10025213 [exp] 486 / 4e-165 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10021386 [exp] 377 / 9e-130 AT3G08720 445 / 4e-157 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10022732 [exp] 285 / 3e-92 AT3G08720 401 / 1e-137 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10014181 [exp] 273 / 2e-87 AT3G08720 307 / 1e-100 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10027196 [exp] 233 / 5e-67 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 231 / 3e-66 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005470 [exp] 226 / 4e-65 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10042650 [exp] 214 / 3e-63 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [poplar] [flax] Pkinase_C Protein kinase C terminal domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.012G073700.1 pacid=42783102 polypeptide=Potri.012G073700.1.p locus=Potri.012G073700 ID=Potri.012G073700.1.v4.1 annot-version=v4.1 ATGGAGAGAAGAAAATTGGTTTCCACATCTCAGAAGAAAACCCTTCTCTCTCTTTTATCCATCAACTTAAAGAAACTCACGATCACACCTCCAAATGACC TTGAGTTCTCTGATGTATTTGGCCCATCATCAACCCCGCATGACCCTAACCATTCACACTCTCCTTCCACGTCATCTTCTGTCCTGGACCCCCCTGTCAT CCACAACAGGTCCCACTCCTTTGTGGGCCCCTCCCCTCGCTACCCTCTTCCCTCTTCTCCTCTCCCCTTCCACCATATCCAAGAAGATGATGAAGCTGTA ATAGAAAATGAAAGTTGTGACAATGAAAAGGGAAAGAGCGAGGATGATGAGGGTCAAGTGGGCAGTTGTGGTAATAATAATAAAATCGGGCCTGCTGATT TTGAGATACTGAGAGTGGTAGGAAAGGGAGCATTTGGTAAGGTGTTTCAAGTAAGAAAGAAGACTGGTGATGGCAAAGAAAAAGGAGGAGGAGGAGGTAG TGGGGATGGGATTTATGCAATGAAAGTAATGAGGAAGGACACAATTATTAAAAAGAAACATGTTGATTACATGAAGGCTGAGAGGGATATCCTCACTAAA GTGGTGCACCCCTTTATCGTCCAGCTTCGCTACTCCTTTCAGACCAAGTCTAAGCTTTACTTAATCTTGGATTTTATGAATGGAGGTCATCTCTTCTTTC ATCTTTATCGGCAAGGGATCTTCAGCGAGGACCAGGCAAGGTTTTATACTGCTGAGATAGTATCTGCTGTTGCCCATCTTCACAAGTGCGGGATTGTGCA TCGGGATCTTAAACCTGAAAATATTCTCTTGGATGCTGACGGGCATGTTCTACTGACTGATTTTGGACTTGCAAAGGAAATTGATGAATCAAGCAGATCC AATTCAATGTGTGGGACCACTGAATACATGGCTCCGGAAATTTTACTGTCCAAGGGCCACAATAAAGATGCAGATTGGTGGAGTGTTGGAATACTTCTGT ATGAAATGCTAACTGGGCAGCCACCATTTACACACTCAAATAGAAAGAAGCTCCAGGAGAGAATTATCAAAGAGAGAGTCAAACTTCCACCATACCTTAG TAGTGAAGCTCACTCCTTGCTGAAAGGATTGCTGCAGAAAGAACCATCAAGAAGGTTAGGCAGTGGTCTTGATGGCGGGGATGAGATCAAAGGCCATAAA TGGTTGCGGCCAATCAACTGGAAAAAATTAGAGGCGAGAGAACTGCAGCCAAAGTACATACCAGATGTGAGTGGCAAAGACTGTACAGCCAACTTTGACC AATGTTGGACAACAATGCCCCTTGATGACTCACCAGCTCCCACACCAACTGCTGGTGAACATTTTCAAGGGTATACTTATGTTGCGCCTAACCCTTGGCT TTCATCCGGATGA
AA sequence Show only first row Show all	>Potri.012G073700.1 pacid=42783102 polypeptide=Potri.012G073700.1.p locus=Potri.012G073700 ID=Potri.012G073700.1.v4.1 annot-version=v4.1 MERRKLVSTSQKKTLLSLLSINLKKLTITPPNDLEFSDVFGPSSTPHDPNHSHSPSTSSSVLDPPVIHNRSHSFVGPSPRYPLPSSPLPFHHIQEDDEAV IENESCDNEKGKSEDDEGQVGSCGNNNKIGPADFEILRVVGKGAFGKVFQVRKKTGDGKEKGGGGGSGDGIYAMKVMRKDTIIKKKHVDYMKAERDILTK VVHPFIVQLRYSFQTKSKLYLILDFMNGGHLFFHLYRQGIFSEDQARFYTAEIVSAVAHLHKCGIVHRDLKPENILLDADGHVLLTDFGLAKEIDESSRS NSMCGTTEYMAPEILLSKGHNKDADWWSVGILLYEMLTGQPPFTHSNRKKLQERIIKERVKLPPYLSSEAHSLLKGLLQKEPSRRLGSGLDGGDEIKGHK WLRPINWKKLEARELQPKYIPDVSGKDCTANFDQCWTTMPLDDSPAPTPTAGEHFQGYTYVAPNPWLSSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.012G073700 [exp]	0	1	CCSPK5.3
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Potri.010G040600 [exp]	1.00	0.9031
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.002G221600 [exp]	2.82	0.8916
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.019G087900 [exp]	4.89	0.8764	SDG907,SUVH3.1
					Potri.003G012451 [exp]	5.09	0.8665
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.001G400300 [exp]	6.78	0.8544
AT3G17740			unknown protein		Potri.015G033300 [exp]	7.54	0.8781
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	9.16	0.8752
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	9.74	0.8757
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Potri.014G016100 [exp]	12.16	0.8432
AT3G45830			unknown protein		Potri.009G026100 [exp]	12.32	0.8723

Compare expression of checked genes

Potri.012G073700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.